View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13026_high_7 (Length: 232)
Name: NF13026_high_7
Description: NF13026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13026_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 27219283 - 27219481
Alignment:
| Q |
17 |
atattcataagataatatcaagcatggatcactaaggaatttatcaggattacaatgaggctgatctacgaaaaaatcattgtttttctagatagtgatc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
27219283 |
atattcataagataatatcaagcatggatcactaaggaatttatcaggattacaatgaggctgatctacaaaaaaatcattgtttttctagatagcgatc |
27219382 |
T |
|
| Q |
117 |
aagaagcttaagaataagggagcatttatttcctatgtacataaatatataatcctatatacaaccatttataaactatatacaacatacacaacttct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27219383 |
aagaagcttaagaataagggagcatttatttcctatgtacataaatatataatcctatatacaaccaattataaactatatacaacatacacaacttct |
27219481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 27213038 - 27213234
Alignment:
| Q |
17 |
atattcataagataatatcaagcatggatcactaaggaatttatcaggattacaatgaggctgatctacgaaaaaatcattgtttttctagatagtgatc |
116 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||| || ||| ||| || |||| |||||||| |||||||||||||||||||||||||| || |
|
|
| T |
27213038 |
atattcataagatagtatcaagtatggatcactaaggaatt-ataagggttataaagaggttgatctacaaaaaaatcattgtttttctagatagt--tc |
27213134 |
T |
|
| Q |
117 |
aagaagctta---agaataagggagcatttatttcctatgtacataaatatataatcctatatacaaccatttataaactatatacaacatacacaactt |
213 |
Q |
| |
|
||||||| || |||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27213135 |
aagaagcctactaagaataagggagcatttatttcataggtgcataaatatataatcctatatacaaccatttataaactatatacaacatacacaactt |
27213234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University