View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13026_low_1 (Length: 382)
Name: NF13026_low_1
Description: NF13026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13026_low_1 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 357
Target Start/End: Original strand, 34692678 - 34693024
Alignment:
| Q |
17 |
aaaatgacggccattagatcgatcttggatatgttggcatacttatgggtgatgaaaatgacaaaaatcatgttaaggttgctctaacaactatggtgcg |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34692678 |
aaaatgacagccattagatcgatcttggatatgttggcatacttatgggtgatgaaaatgacaaaaatcatgttaaggttgctctaacaactatggtgcg |
34692777 |
T |
|
| Q |
117 |
gtaactagcaatttctcaagtttggtcagatcagcaatgcaaaacatcggc----taaaataaaaactccctgaattaatgatacaatttgagttcaaaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
34692778 |
gtaactagcaatttctcaagtttggtcagatcagcaatgcaaaacatcggctaaataaaataaaaactccctgaaataataatacaatttgagttcaaaa |
34692877 |
T |
|
| Q |
213 |
agagacaatttgagtaacgtatgaaataaatacaaccctcgagtcaatccaatccaatccaataaaccctaaagaaagaactttacatttgtaacctc-- |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34692878 |
agagacaatttgagtaacgtatgaaataaatacaaccctcgagtcaatccaatccaatccaataaaccctaaagaaagaactttacatttgtaacctcca |
34692977 |
T |
|
| Q |
311 |
caccctccctttttctactcgttcaattacatcatcttccattacag |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34692978 |
caccctccctttttctactcgttcaattacatcatcttccattacag |
34693024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 34685115 - 34685159
Alignment:
| Q |
313 |
ccctccctttttctactcgttcaattacatcatcttccattacag |
357 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| ||||| |||| |
|
|
| T |
34685115 |
ccctccccttttctactctttcaattacatcatcatccatcacag |
34685159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 305 - 382
Target Start/End: Original strand, 8282833 - 8282909
Alignment:
| Q |
305 |
aacctccaccctccctttttctactcgttcaattacatcatcttccattacagctacttacacaaccatttcttctcc |
382 |
Q |
| |
|
|||||||||||||| || ||| |||| | |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8282833 |
aacctccaccctccattattc-actcttgcaattacatcatcttccattacagttacttacacaaccatttcttctcc |
8282909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University