View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13026_low_3 (Length: 285)
Name: NF13026_low_3
Description: NF13026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13026_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 33495035 - 33495290
Alignment:
| Q |
10 |
ttgtgtgcaactatttttcattcatttccaatcaaataattgannnnnnnnnaacaatctaagataaaattttgaaacttgtattattaattttgataca |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33495035 |
ttgtgtgcaactatttttcattcatttccaatcaaataattgattttttt--aacaatcaaagataaaattttgaaacttgtattattaattttgataca |
33495132 |
T |
|
| Q |
110 |
aaaaagcggatagacattcatgttagtaacgaa-ttatatatagtaatcacgtaaaattctgataaaagggtcataaagcaaaacaaaattttaattacc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33495133 |
aaaaagcggatagacattcatgttagtaacgaaattatatatagtaatcacgtaaaattctgataaaagggtcataaagcaaaacaaaattttaattacc |
33495232 |
T |
|
| Q |
209 |
tctcaacatgatgaagcagtgaaattaagatctaatcactgtcactgctgctgctatc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33495233 |
tctcaacatgatgaagcagtgaaattaagatctaatcactgtcactgctgctgctatc |
33495290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 264
Target Start/End: Complemental strand, 9757748 - 9757719
Alignment:
| Q |
235 |
aagatctaatcactgtcactgctgctgcta |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9757748 |
aagatctaatcactgtcactgctgctgcta |
9757719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University