View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13026_low_4 (Length: 271)

Name: NF13026_low_4
Description: NF13026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13026_low_4
NF13026_low_4
[»] chr1 (2 HSPs)
chr1 (1-253)||(34142166-34142420)
chr1 (218-254)||(1834466-1834502)
[»] chr8 (5 HSPs)
chr8 (211-254)||(24195253-24195296)
chr8 (211-253)||(40795382-40795424)
chr8 (216-253)||(17062358-17062395)
chr8 (216-253)||(17585963-17586000)
chr8 (218-254)||(13272543-13272579)
[»] chr6 (2 HSPs)
chr6 (211-253)||(13496121-13496163)
chr6 (216-252)||(3373400-3373436)
[»] chr5 (2 HSPs)
chr5 (211-253)||(13864349-13864391)
chr5 (211-253)||(20721055-20721097)
[»] chr4 (1 HSPs)
chr4 (211-253)||(7371562-7371604)
[»] chr7 (4 HSPs)
chr7 (216-253)||(429197-429234)
chr7 (200-253)||(8883558-8883611)
chr7 (208-253)||(23413057-23413102)
chr7 (216-248)||(3672571-3672603)
[»] chr3 (5 HSPs)
chr3 (211-252)||(1111855-1111896)
chr3 (212-253)||(5941309-5941350)
chr3 (211-252)||(7824813-7824854)
chr3 (218-254)||(2186448-2186484)
chr3 (221-253)||(42784962-42784994)
[»] chr2 (5 HSPs)
chr2 (216-253)||(9547428-9547465)
chr2 (199-253)||(15427697-15427753)
chr2 (216-253)||(19159946-19159983)
chr2 (216-252)||(9964497-9964533)
chr2 (216-252)||(37119277-37119313)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 34142166 - 34142420
Alignment:
Q  1 cactaaatttagtcaaatgtgagaataattaggagctaggaaaataatagtggaaatgtgtttataatcactaaattaatcagcccatgcatgagtgcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34142166 cactaaatttagtcaaatgtgagaataattaggagctaggaaaataatagtggaaatgtgtttataatcactaaattaatcagtccatgcatgagtgcaa 34142265  T
Q  101 aattagaatgagggcaagatggtaatatcaacaaacgacaaagagcatattagagatagtacaatgagtaaacaaccattttcata-nnnnnnnggctca 199  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  34142266 aattagaacgagggcaagatggtaatatcaacaaacgacaaagagcatattagagatagtacaatgagtaaacaaccattttcatattttttttggctca 34142365  T
Q  200 gatttgaac-ccgaccatgcatatattatgtattgtgcatatcaactgagttaag 253  Q
    |||| |||| || ||| |||||||||||||||||||||||| |||||||| ||||    
T  34142366 gattcgaactccaaccttgcatatattatgtattgtgcataccaactgagctaag 34142420  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 1834466 - 1834502
Alignment:
Q  218 catatattatgtattgtgcatatcaactgagttaagt 254  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  1834466 catatattatgtattgtccatattaactgagttaagt 1834502  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 24195296 - 24195253
Alignment:
Q  211 gaccatgcatatattatgtattgtgcatatcaactgagttaagt 254  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||    
T  24195296 gaccttgcatatattatgtattgttcatatcaactgagctaagt 24195253  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 40795424 - 40795382
Alignment:
Q  211 gaccatgcatatattatgtattgtgcatatcaactgagttaag 253  Q
    |||| ||||||||||||||||||| |||| |||||||||||||    
T  40795424 gaccttgcatatattatgtattgttcataccaactgagttaag 40795382  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 17062358 - 17062395
Alignment:
Q  216 tgcatatattatgtattgtgcatatcaactgagttaag 253  Q
    |||||||||||||||||||  |||||||||||||||||    
T  17062358 tgcatatattatgtattgtctatatcaactgagttaag 17062395  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 17586000 - 17585963
Alignment:
Q  216 tgcatatattatgtattgtgcatatcaactgagttaag 253  Q
    |||||||||||||||||||  |||||||||||||||||    
T  17586000 tgcatatattatgtattgtctatatcaactgagttaag 17585963  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 13272543 - 13272579
Alignment:
Q  218 catatattatgtattgtgcatatcaactgagttaagt 254  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  13272543 catatattatgcattgtccatatcaactgagttaagt 13272579  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 13496163 - 13496121
Alignment:
Q  211 gaccatgcatatattatgtattgtgcatatcaactgagttaag 253  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||    
T  13496163 gaccttgcatatattatgcattgttcatatcaactgagttaag 13496121  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 3373400 - 3373436
Alignment:
Q  216 tgcatatattatgtattgtgcatatcaactgagttaa 252  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  3373400 tgcatatattatgcattgtccatatcaactgagttaa 3373436  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 13864391 - 13864349
Alignment:
Q  211 gaccatgcatatattatgtattgtgcatatcaactgagttaag 253  Q
    |||| ||||||||||||||||||| |||| |||||||||||||    
T  13864391 gaccttgcatatattatgtattgttcataccaactgagttaag 13864349  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 20721097 - 20721055
Alignment:
Q  211 gaccatgcatatattatgtattgtgcatatcaactgagttaag 253  Q
    |||| ||||||||||||||||||| |||| |||||||||||||    
T  20721097 gaccttgcatatattatgtattgtccataccaactgagttaag 20721055  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 7371562 - 7371604
Alignment:
Q  211 gaccatgcatatattatgtattgtgcatatcaactgagttaag 253  Q
    |||| ||||||||||||||||||| | ||||||||||||||||    
T  7371562 gaccttgcatatattatgtattgtccttatcaactgagttaag 7371604  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 429197 - 429234
Alignment:
Q  216 tgcatatattatgtattgtgcatatcaactgagttaag 253  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  429197 tgcatatattatgtattatccatatcaactgagttaag 429234  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 8883611 - 8883558
Alignment:
Q  200 gatttgaacccgaccatgcatatattatgtattgtgcatatcaactgagttaag 253  Q
    |||| |||||||||| |||| |||||||| ||||| |||| |||||||||||||    
T  8883611 gattcgaacccgaccttgcacatattatgcattgtccataccaactgagttaag 8883558  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 23413057 - 23413102
Alignment:
Q  208 cccgaccatgcatatattatgtattgtgcatatcaactgagttaag 253  Q
    ||||||| ||||||||||||| ||||| |||| |||||||||||||    
T  23413057 cccgaccttgcatatattatgcattgtccataccaactgagttaag 23413102  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 3672571 - 3672603
Alignment:
Q  216 tgcatatattatgtattgtgcatatcaactgag 248  Q
    ||||||||||||||||||| |||||||||||||    
T  3672571 tgcatatattatgtattgtccatatcaactgag 3672603  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 1111855 - 1111896
Alignment:
Q  211 gaccatgcatatattatgtattgtgcatatcaactgagttaa 252  Q
    |||| ||||||||||||||||||| | |||||||||||||||    
T  1111855 gaccttgcatatattatgtattgtccctatcaactgagttaa 1111896  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 5941309 - 5941350
Alignment:
Q  212 accatgcatatattatgtattgtgcatatcaactgagttaag 253  Q
    ||||||||||||||||| ||||| |||| |||||||||||||    
T  5941309 accatgcatatattatgcattgttcataccaactgagttaag 5941350  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 7824854 - 7824813
Alignment:
Q  211 gaccatgcatatattatgtattgtgcatatcaactgagttaa 252  Q
    |||| |||||||||||||||||||  ||||||||||||||||    
T  7824854 gaccttgcatatattatgtattgtctatatcaactgagttaa 7824813  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 2186448 - 2186484
Alignment:
Q  218 catatattatgtattgtgcatatcaactgagttaagt 254  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  2186448 catatattatgtattgtccataccaactgagttaagt 2186484  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 42784994 - 42784962
Alignment:
Q  221 atattatgtattgtgcatatcaactgagttaag 253  Q
    |||||||||||||| ||||||||||||||||||    
T  42784994 atattatgtattgtccatatcaactgagttaag 42784962  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 9547428 - 9547465
Alignment:
Q  216 tgcatatattatgtattgtgcatatcaactgagttaag 253  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  9547428 tgcatatattatgcattgtccatatcaactgagttaag 9547465  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 15427753 - 15427697
Alignment:
Q  199 agatttgaaccc--gaccatgcatatattatgtattgtgcatatcaactgagttaag 253  Q
    ||||||||||||  |||| |||||||||||| |||||| ||||||||||||| ||||    
T  15427753 agatttgaaccctagaccttgcatatattatatattgtccatatcaactgagctaag 15427697  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 19159983 - 19159946
Alignment:
Q  216 tgcatatattatgtattgtgcatatcaactgagttaag 253  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  19159983 tgcatatattatgcattgttcatatcaactgagttaag 19159946  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 9964533 - 9964497
Alignment:
Q  216 tgcatatattatgtattgtgcatatcaactgagttaa 252  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  9964533 tgcatatattacgtattgttcatatcaactgagttaa 9964497  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 37119277 - 37119313
Alignment:
Q  216 tgcatatattatgtattgtgcatatcaactgagttaa 252  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  37119277 tgcatatattatgcattgttcatatcaactgagttaa 37119313  T

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