View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13027_high_10 (Length: 287)
Name: NF13027_high_10
Description: NF13027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13027_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 6866067 - 6866322
Alignment:
| Q |
13 |
aatatccaacatacacacaatgatatggacttttgaattgtaatacttaccttggcaacctctctcaattctctaagaggtatgtttgattgtaacctac |
112 |
Q |
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| T |
6866067 |
aatatccaacatacacacaatgatatggacttttgaattgtaatacttaccttggcaacctctctcaattctctaagaggtatgtttgattgtaacctac |
6866166 |
T |
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| Q |
113 |
tgagagtcctactcaaagcaccaacaggtggtattggaccatcaagatcagcagtaggtagagagacttgtttgttatcattgagaatcacaatcatgtt |
212 |
Q |
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| T |
6866167 |
tgagagtcctactcaaagcaccaacaggtggtattggaccatcaagatcagcagtaggtagagagacttgtttgttatcattgagaatcacaatcatgtt |
6866266 |
T |
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| Q |
213 |
agaattaagataaccagcattgttcatggcttcaaaagcttggccggcggtcatgg |
268 |
Q |
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| T |
6866267 |
agaattaagataaccagcattgttcatggcttcaaaagcttggccggcggtcatgg |
6866322 |
T |
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Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 56 - 254
Target Start/End: Complemental strand, 49146501 - 49146303
Alignment:
| Q |
56 |
tacttaccttggcaacctctctcaattctctaagaggtatgtttgattgtaacctactgagagtcctactcaaagcaccaacaggtggtattggaccatc |
155 |
Q |
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| T |
49146501 |
tactcacctttgcaacctctctcaattctctaagaggtttgtttgattgtaacctactgagtgcactactcaaagctcctacaggtggtataggtccatc |
49146402 |
T |
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| Q |
156 |
aagatcagcagtaggtagagagacttgtttgttatcattgagaatcacaatcatgttagaattaagataaccagcattgttcatggcttcaaaagcttg |
254 |
Q |
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| T |
49146401 |
aagagtagcagttggtaaagaaacttgtttgttgtcattcaaaataacaatcatatcagaatcaagatatccagcattgttcattgcttcgtaagcttg |
49146303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 28468127 - 28468039
Alignment:
| Q |
178 |
acttgtttgttatcattgagaatcacaatcatgttagaattaagataaccagcattgttcatggcttcaaaagcttggccggcggtcat |
266 |
Q |
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| T |
28468127 |
acttgcttgttgtcattcagaataactatcaagttagaatcaatgaatcctgcattgttcatggcctcataagcttggccggcagtcat |
28468039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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