View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13027_high_11 (Length: 273)
Name: NF13027_high_11
Description: NF13027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13027_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 27984637 - 27984871
Alignment:
| Q |
16 |
atcacaatatcaaacggagcacaaaagttaagaaacaagtcaaaacaacatacacaaatttcatattgttagagaatcctaaagtcacacaatcaaacaa |
115 |
Q |
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| T |
27984637 |
atcacaatatcaaatggagcacaaaagttaagaaacaagtcaaaacaacatacacaaatttcatattgttagagaatcctaaagtcacacaatcaaacaa |
27984736 |
T |
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| Q |
116 |
atacaattcatataaaaagatcaaacaattcggttaaaatggagtctc--tatcagannnnnnnaatgnnnnnnntaataactaaaattattgagtttaa |
213 |
Q |
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| T |
27984737 |
atacaattcatataaaaagatcaaacaatacggttaaaatggagtcccaatatcagattttcttaatgaaaaaaataataactaaaattattgagtttaa |
27984836 |
T |
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| Q |
214 |
taactaggacataaaccgagtttaataaatggaag |
248 |
Q |
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| T |
27984837 |
taactaggacataaaccgagtttaataaatggaag |
27984871 |
T |
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