View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13027_high_2 (Length: 761)
Name: NF13027_high_2
Description: NF13027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13027_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 646; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 16 - 744
Target Start/End: Original strand, 47408959 - 47409687
Alignment:
| Q |
16 |
acctaccaaatatgagagggacagaacacgatagagtcatctaaaatttaaagaaagagcttcgtaccttgatatccctgtgaataattcggttattgtg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47408959 |
acctaccaaatatgagagggacagaacacgatagagtcatctaaaatttaaagaaagagcttcgtaccttgatatccctgtgaataattcggttattgtg |
47409058 |
T |
|
| Q |
116 |
aaggtattcaagaccatctaaaagctgttttgtatacgttctgataacctgttnnnnnnnttgaacatgaagcaacnnnnnnngcacaacccatgatata |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
47409059 |
aaggtattcaagaccatctaaaagctgttttgtatacgttctgataacctgttaaaaaaattgaacatgaagcaacaaaaaaagcacaacccatgatata |
47409158 |
T |
|
| Q |
216 |
ctccatgaacttgataaagtaaaatccactcaccgactcagggaaggatccgaatttccccaatagggatgagatagatccaccaggtacaaactccaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47409159 |
ctccatgaacttgataaagtaaaatccactcaccgactcagggaaggatccgaatttccccaatagtgatgagatagatccaccaggtacaaactccaac |
47409258 |
T |
|
| Q |
316 |
aagatatttaaggaatcttcctctcttgcagttcccaagtatctctataataaatgacaaccaaaaagaataaaataaaattactatatttgacatcaag |
415 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
47409259 |
aaaatatttaaggaatcttcctctcttgcagttcccaagtatctctataataaatgacaaccaaaaaggataaaataaaattactatattcgacatcaag |
47409358 |
T |
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| Q |
416 |
caatcaaaatcactcagactaacactcacaacaatatttggatgcttaagattcttgagaagcttcacttcttcttcgagctcccggatattagcctgat |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47409359 |
caatcaaaatcactcagactaacactcacaacaatatttggatgcttaagattcttgagaagcttcacttcttcttcgagctcccggatattagcctgat |
47409458 |
T |
|
| Q |
516 |
tcaaccagatagagacagatttttcagattatagttcaacatcaacattgtaaaacgcacagcttatataaaatcataaaattaaaacacatcaatgcta |
615 |
Q |
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| T |
47409459 |
tcaaccagatagagacagatttttcagattatagttcaacatcaacattgtaaaacgcacagcttatataaaatcataaaattaaaacacatcaatgcta |
47409558 |
T |
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| Q |
616 |
ctgcnnnnnnncttatcggaaactcagtatccggtccaaagtccgactaatccagaggatcaatcccaaatcaatgatattgcttaattcatacggtaag |
715 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47409559 |
ctgctttttttcttatcggaaactcagtatccggtccaaagtccgactaatccagaggatcaatcccaaatcaatgatattgcttaattcatatggtaag |
47409658 |
T |
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| Q |
716 |
aactgatgcataatgcattgccacttaat |
744 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
47409659 |
aactgatgcataatgcattgccacttaat |
47409687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 633 - 681
Target Start/End: Original strand, 24405045 - 24405093
Alignment:
| Q |
633 |
ggaaactcagtatccggtccaaagtccgactaatccagaggatcaatcc |
681 |
Q |
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|||||||| |||||||| |||||||||||||||||||| ||| |||||| |
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| T |
24405045 |
ggaaactcggtatccgggccaaagtccgactaatccaggggaccaatcc |
24405093 |
T |
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