View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13027_high_3 (Length: 635)
Name: NF13027_high_3
Description: NF13027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13027_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Original strand, 52353253 - 52353664
Alignment:
| Q |
15 |
acttatatcagtatgtttaataccattttttcttacgacaatgaataatagagaatattaggtgaaaagatgggaacaaattagtgctctacatccacta |
114 |
Q |
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| T |
52353253 |
acttatatcagtatgtttaataccattttttcttacgacaatgaataatagagaatattaggtgaaaagatgggaacaaattagtgctctacatccacta |
52353352 |
T |
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| Q |
115 |
catactatactaagatnnnnnnnn-----gaagaagatgggaattaattccttccccaacatgaattgattattattagatacaaaatccaattccagta |
209 |
Q |
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| T |
52353353 |
catactatactaagataaaaaaaaagaaagaagaagaggggaattaattccttccccaacatgaattgattattattagatacaaaatccaattccagta |
52353452 |
T |
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| Q |
210 |
taggaaataggaataatcct-ttttgttccaaatgatgccaccacgtttcagttccaattaggcaaaattagtttaatgctgcttatgcttatgccagtt |
308 |
Q |
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| T |
52353453 |
taggaaataggaataatcctcttttgttccaaatgatgccaccacgtttcagttccaattaggcaaaattagtttaatgctgcttatgcttatgccagtt |
52353552 |
T |
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| Q |
309 |
gtgattgtgaagttgcatttcgcactctgttagaatcagattcatctgcagcatgtctaagcctatttaatcactaatctgttgctgcacgatgcgaatt |
408 |
Q |
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| T |
52353553 |
gtgattgtgaagttgcatttcgcactctgttagaatcagattcatctgcagcatgtctaagcctatttaatcactaatctgttgctgcacgatgcgaatt |
52353652 |
T |
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| Q |
409 |
cctaagaggcta |
420 |
Q |
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| T |
52353653 |
cctaagaggcta |
52353664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 479 - 632
Target Start/End: Original strand, 52353723 - 52353876
Alignment:
| Q |
479 |
ggatttcctttgcatttggagtttccgctaaaccttctcgtctcttccccaacatcgcatcaccaggttcgttttcgttgctaaacctgatgatttcttg |
578 |
Q |
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| T |
52353723 |
ggatttcctttgcatttggaatttccgctaaaccttctcgtctcttccccaacatcgcatcaccaggttcgttttcgttgctaaacctgatgatttcttg |
52353822 |
T |
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| Q |
579 |
tgctctaagttttttgaaccatttctttatttggttgtttccattgacttattt |
632 |
Q |
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| T |
52353823 |
tgctctaagttttttgaaccatttctttatttgtttgtttcgattgacttattt |
52353876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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