View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13027_high_7 (Length: 396)
Name: NF13027_high_7
Description: NF13027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13027_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 380
Target Start/End: Original strand, 35071767 - 35072131
Alignment:
| Q |
16 |
atcaagcaaaaatcaacggaaccttaccagacattttcggtagtttctctagtctcaacacccttcatctcgcatacaacaatctcagcggaggattacc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35071767 |
atcaagcaaaaatcaacggaaccttaccagacattttcggtagtttctctagtctcaacacccttcatctcgcatacaacaatctcagcggaggattacc |
35071866 |
T |
|
| Q |
116 |
taactctctcgctggttccggaattcagagtttttggatcaataacaatttacctgggttaaccggttcaatcactgtgatttccaacatgacattgtta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35071867 |
taactctctcgctggttccggaattcagagtttttggatcaataacaatttacctgggttaaccggttcaatcactgtgatttccaacatgacattgtta |
35071966 |
T |
|
| Q |
216 |
actcaggtatggcttcatgtgaataaattcaccggtccaattccagatttatcgcaatgcaatagtataaaagatctgcaacttagggataatcagttaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35071967 |
actcaggtatggcttcatgtgaataaattcaccggtccaattccagatttatcgcaatgcaatagtataaaagatctgcaacttagggataatcagttaa |
35072066 |
T |
|
| Q |
316 |
ctggtgtggttcctgattctctggtgagcatgtctagcttgcagaatgttactctaagaaataat |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35072067 |
ctggtgtggttcctgattctctggtgagcatgtctggcttgcagaatgttactctaagaaataat |
35072131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 249 - 369
Target Start/End: Original strand, 33919983 - 33920103
Alignment:
| Q |
249 |
ggtccaattccagatttatcgcaatgcaatagtataaaagatctgcaacttagggataatcagttaactggtgtggttcctgattctctggtgagcatgt |
348 |
Q |
| |
|
||||| |||| |||||||||||||||||||| |||| | ||||||||||||||||||| ||||||||| || || ||| |||| | || | ||| |||| |
|
|
| T |
33919983 |
ggtcctattctagatttatcgcaatgcaataatatatatgatctgcaacttagggatagtcagttaaccggcgttgttactgagtttccgatgaatatgt |
33920082 |
T |
|
| Q |
349 |
ctagcttgcagaatgttactc |
369 |
Q |
| |
|
|||| ||| |||||||||||| |
|
|
| T |
33920083 |
ctaggttgaagaatgttactc |
33920103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University