View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13027_low_1 (Length: 897)
Name: NF13027_low_1
Description: NF13027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13027_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 552; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 320 - 875
Target Start/End: Original strand, 41705459 - 41706014
Alignment:
| Q |
320 |
cttcaacctcggaccccactcccaacccataactctctacatggacacaggaagtgaccttgtttggttcccatgcacaccgttcaactgcatcctctgt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41705459 |
cttcaacctcggaccccactcccaacccataactctctacatggacacaggaagtgaccttgtttggttcccatgcacaccgttcaactgcatcctctgt |
41705558 |
T |
|
| Q |
420 |
gaattaaaacccaagcttacctcggatccctctccccctaccaacatctcccacagcacccccatttcatgcaactcccatgcatgctctgtagcacaca |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41705559 |
gaattaaaacccaagcttacctcggatccctctccccctaccaacatctcccacagcacccccatttcatgcaactcccatgcatgctctgtagcacaca |
41705658 |
T |
|
| Q |
520 |
gttccaccccctcttccgatctatgcacaatggctcattgccctttagactccattgaaaccaaagactgcggttcatttcactgtccaccattctacta |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41705659 |
gttccaccccctcttccgatctatgcacaatggctcattgccctttagactccattgaaaccaaagactgcggttcatttcactgtccaccattctacta |
41705758 |
T |
|
| Q |
620 |
cgcttacggcgatggaagcttaatagcttctctctatcgcgatacactttctctttctactcttcaacttacaaaattcacattcggttgtgctcataca |
719 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41705759 |
cgcttacggcgatggaagcttaatagcttctctctatcgcgatacactttctctttctactcttcaacttacaaacttcacattcggttgtgctcataca |
41705858 |
T |
|
| Q |
720 |
actttctccgaacccaccggagtcgctggcttcggtcgtggattactttctctcccagctcagttagctactcactctcctcaacttggaaaccgttttt |
819 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41705859 |
actttctccgaacccaccggagtcgctggcttcggtcgtggattactttctctcccagctcagttagctactcactctcctcaacttggaaaccgttttt |
41705958 |
T |
|
| Q |
820 |
cttattgtttggtttctcattcttttcgttctgaacgaattcgaaaaccaagtcca |
875 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41705959 |
cttattgtttggtttctcattcttttcgttctgaacgaattcgaaaaccaagtcca |
41706014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 41705140 - 41705399
Alignment:
| Q |
1 |
acaccactccatctacaaattcaaaaactcttctcctctctctgtattcaagttccaacacnnnnnnncaaatac--tgtttaaccaaatggcttctccc |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
41705140 |
acaccactccatctacaaattcaaaaactcttctcctctct--gtattcaagttccaacacaaaaaaacaaataccctgtttaaccaaatggcttctccc |
41705237 |
T |
|
| Q |
99 |
ctgttatttctcctcatcatcacactcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccataatagaattcaaca |
198 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41705238 |
ctgttatttctcctcctcatcacactcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccatgatagaattcaaca |
41705337 |
T |
|
| Q |
199 |
caacccaccacctccttaaatccacctcaactcactcattatcacgcttccaccgccataaa |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41705338 |
caacccaccacctccttaaatccacctcaactcactcattatcacgcttccaccgccataaa |
41705399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 3744418 - 3744338
Alignment:
| Q |
342 |
caacccataactctctacatggacacaggaagtgaccttgtttggttcccatgcacaccgttcaactgcatcctctgtgaa |
422 |
Q |
| |
|
|||| |||||| ||||||||||||||||| || ||||||||||||||||| || |||| ||| | ||||| ||||||||| |
|
|
| T |
3744418 |
caactcataacactctacatggacacaggtagcgaccttgtttggttcccttgttcacctttcgaatgcattctctgtgaa |
3744338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University