View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13027_low_12 (Length: 273)

Name: NF13027_low_12
Description: NF13027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13027_low_12
NF13027_low_12
[»] chr4 (2 HSPs)
chr4 (1-261)||(17443452-17443709)
chr4 (1-104)||(17439307-17439407)
[»] chr1 (3 HSPs)
chr1 (1-261)||(4873134-4873391)
chr1 (1-104)||(4877434-4877534)
chr1 (1-102)||(30190054-30190153)
[»] chr8 (3 HSPs)
chr8 (1-261)||(3058492-3058748)
chr8 (1-102)||(3062793-3062891)
chr8 (1-102)||(26082806-26082904)
[»] chr6 (1 HSPs)
chr6 (1-103)||(6667868-6667967)
[»] chr7 (1 HSPs)
chr7 (5-150)||(16174244-16174386)
[»] chr3 (1 HSPs)
chr3 (31-97)||(28010232-28010295)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 17443709 - 17443452
Alignment:
Q  1 ttcactttttctgttttttctatatattgtatcagaaactttattttgataaaaaagaatgaaattatcttcaagtttctgaaataacttttagttctta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |   ||||||||||||||||||||||||||||||||||||||||||||    
T  17443709 ttcactttttctgttttttctatatattgtatcagaaactttattttgatgta---gaatgaaattatcttcaagtttctgaaataacttttagttctta 17443613  T
Q  101 caaatggtatacagagcttcttcgttcttaaagggcttgtgattaaaaacccttgctttcttgacacccaaccatttttcttgatggcttcaaacaatat 200  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17443612 caaatggtatacagagcttctttgttcttaaagggcctgtgattaaaaacccttgctttcttgacacccaaccatttttcttgatggcttcaaacaatat 17443513  T
Q  201 tacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgatgatg 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17443512 tacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatg 17443452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 17439407 - 17439307
Alignment:
Q  1 ttcactttttctgttttttctatatattgtatcagaaactttattttgataaaaaagaatgaaattatcttcaagtttctgaaataacttttagttctta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||    
T  17439407 ttcactttttctgttttttctatatattgtatcagaaactttattttgat---gtagaatgaaattatcttcaagtttctgaaataacttttagttctta 17439311  T
Q  101 caaa 104  Q
    ||||    
T  17439310 caaa 17439307  T

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Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 4873134 - 4873391
Alignment:
Q  1 ttcactttttctgttttttctatatattgtatcagaaactttattttgataaaaaagaatgaaattatcttcaagtttctgaaataacttttagttctta 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||  |   |||||||||||||||||||||||||||||||||||| |||||||    
T  4873134 ttcactttttctgttttttctaaatattgtatcagaaactttattttgatgta---gaatgaaattatcttcaagtttctgaaataactttttgttctta 4873230  T
Q  101 caaatggtatacagagcttcttcgttcttaaagggcttgtgattaaaaacccttgctttcttgacacccaaccatttttcttgatggcttcaaacaatat 200  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4873231 caaatggtatacagagcttctttgttcttaaagggcctgtgattaaaaacccttgctttcttgacacccaaccatttttcttgatggcttcaaacaatat 4873330  T
Q  201 tacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgatgatg 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4873331 tacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatg 4873391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 4877434 - 4877534
Alignment:
Q  1 ttcactttttctgttttttctatatattgtatcagaaactttattttgataaaaaagaatgaaattatcttcaagtttctgaaataacttttagttctta 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||  |   ||||||||||||||||||||||||||||||||||||||||||||    
T  4877434 ttcactttttctgttttttctacatattgtatcagaaactttattttgatgta---gaatgaaattatcttcaagtttctgaaataacttttagttctta 4877530  T
Q  101 caaa 104  Q
    ||||    
T  4877531 caaa 4877534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 30190054 - 30190153
Alignment:
Q  1 ttcactttttctgttttttctatatattgtatcagaaactttattttgataaaaaagaatgaaattatcttcaagtttctgaaataac-ttttagttctt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   |  ||||| |||| |||||| |||||||||||| || |||||||||||    
T  30190054 ttcactttttctgttttttctatatattgtatcagaaactttattttga---agtagaataaaatcatcttccagtttctgaaattactttttagttctt 30190150  T

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Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 3058492 - 3058748
Alignment:
Q  1 ttcactttttctgttttttctatatattgtatcagaaactttattttgataaaaaagaatgaaattatcttcaagtttctgaaataacttttagttctta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |   ||||||||||||||||||||||||||||||||||||||||||||    
T  3058492 ttcactttttctgttttttctatatattgtatcagaaactttattttgatgca---gaatgaaattatcttcaagtttctgaaataacttttagttctta 3058588  T
Q  101 caaatggtatacagagcttcttcgttcttaaagggcttgtgattaaaaacccttgctttcttgacacccaaccatttttcttgatggcttcaaacaatat 200  Q
    |||||||||| |||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3058589 caaatggtat-cagagcttctttcttcttaaagggcctgtgattaaaaacccttgctttcttgacacccaaccatttttcttgatggctttaaacaatat 3058687  T
Q  201 tacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgatgatg 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3058688 tacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatg 3058748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 3062793 - 3062891
Alignment:
Q  1 ttcactttttctgttttttctatatattgtatcagaaactttattttgataaaaaagaatgaaattatcttcaagtttctgaaataacttttagttctta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||    
T  3062793 ttcactttttctgttttttctatatattgtatcagaaactttattttgat---gcagaatgaaattatcttcaagtttctgaaataacttttagttctta 3062889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 26082904 - 26082806
Alignment:
Q  1 ttcactttttctgttttttctatatattgtatcagaaactttattttgataaaaaagaatgaaattatcttcaagtttctgaaataacttttagttctta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||| ||    
T  26082904 ttcactttttctgttttttctatatattgtatcagaaactttattttgat---gtagaatgaaattatcttcaagtttctgaaataacttttagttcata 26082808  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 6667967 - 6667868
Alignment:
Q  1 ttcactttttctgttttttctatatattgtatcagaaactttattttgataaaaaagaatgaaattatcttcaagtttctgaaataacttttagttctta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||| |||||||| |||||||||||||||||||    
T  6667967 ttcactttttctgttttttctatatattgtatcagaaactttattttgat---gtagaatgaaattatcttaaagtttcttaaataacttttagttctta 6667871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 16174244 - 16174386
Alignment:
Q  5 ctttttctgttttttctatatattgtatcagaaactttattttgataaaaaagaatgaaattatcttcaagtttctgaaataacttttagttcttacaaa 104  Q
    ||||| ||||||||||| ||||||||||||||||| | |||||||   |  ||||||| |||||||| ||||||  |||||  |||||  | |  |||||    
T  16174244 cttttcctgttttttctgtatattgtatcagaaacatcattttga---agtagaatgatattatcttgaagtttaggaaatttcttttcatgcaaacaaa 16174340  T
Q  105 tggtatacagagcttcttcgttcttaaagggcttgtgattaaaaac 150  Q
    ||||||||| |||||||| ||||||||||| || ||||||||||||    
T  16174341 tggtatacaaagcttctttgttcttaaaggtctagtgattaaaaac 16174386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 28010295 - 28010232
Alignment:
Q  31 atcagaaactttattttgataaaaaagaatgaaattatcttcaagtttctgaaataacttttagttc 97  Q
    ||||||||||| |||||||| ||   | |||||||||||||||||||||||||||  ||||||||||    
T  28010295 atcagaaacttcattttgatgaa---gtatgaaattatcttcaagtttctgaaatttcttttagttc 28010232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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