View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13027_low_15 (Length: 228)
Name: NF13027_low_15
Description: NF13027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13027_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 17159857 - 17159647
Alignment:
| Q |
1 |
aaaaacagagagcaaaacgaccactggcaatcggttattacgaccgtaaagctctagagcctcaccttcaaaaactttccactccacgnnnnnnnctaga |
100 |
Q |
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| T |
17159857 |
aaaaacagagagcaaaacgaccactcgcaatcggttattacgaccgtaaagctctagagcctcaccttcaaaaaaattccaccccacgaaaaaaactaga |
17159758 |
T |
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| Q |
101 |
gggcaatatttccacctgtaatgataattatagcgataaagcccaaataagttacaccttatccccctatctttgtttaatttttcatgctaaaacattg |
200 |
Q |
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| T |
17159757 |
ggggaatattgccacctgtaatgataattatgccgataaagcccaaataagttacaccttatccccctatctttgttaaatttttcatgctaaaacattg |
17159658 |
T |
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| Q |
201 |
agtacaatttc |
211 |
Q |
| |
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|| |||||||| |
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| T |
17159657 |
aggacaatttc |
17159647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 17153450 - 17153666
Alignment:
| Q |
1 |
aaaaacagagagcaaaacgaccactggcaatcggttattacgaccgtaaagctctagagcctca---ccttcaaaaactttccactccacgnnnnnnnct |
97 |
Q |
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|||||||||||||||| |||||||| |||||| |||||| ||||||||| ||||||| |||||| |||||||||| ||||||| ||||| || |
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| T |
17153450 |
aaaaacagagagcaaatcgaccactcgcaatcagttattgcgaccgtaatgctctagggcctcatcaccttcaaaaaatttccaccccacgaaaaaaact |
17153549 |
T |
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| Q |
98 |
agagggcaa---tatttccacctgtaatgataattatagcgataaagcccaaataagttacaccttatccccctatctttgtttaatttttcatgctaaa |
194 |
Q |
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|||||| || |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17153550 |
agaggggaagaatattgccaccagtaatgataattatgccgataaagcccaaataagttacaccttatccccctatctttgtttaatttttcatgctata |
17153649 |
T |
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| Q |
195 |
acattgagtacaatttc |
211 |
Q |
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|||||||| |||||||| |
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| T |
17153650 |
acattgaggacaatttc |
17153666 |
T |
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