View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13027_low_4 (Length: 494)
Name: NF13027_low_4
Description: NF13027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13027_low_4 |
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| [»] scaffold0048 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 101; Significance: 7e-50; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 306 - 437
Target Start/End: Original strand, 2958059 - 2958188
Alignment:
| Q |
306 |
ttggtatagatccatccatccctaatgaagaatattggacccaagttcacactcctataacctatggaaacattttttgagttttgcttggactaaaaat |
405 |
Q |
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| T |
2958059 |
ttggtatagattcatccatccctaaaggagaatattggacccaagttcacactcccataacctatggaaaca--ttttgagttttgcttggactaaaaat |
2958156 |
T |
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| Q |
406 |
caacattgacttctaagcaagaaacaaaagta |
437 |
Q |
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| T |
2958157 |
caacatggacttctaagcaagaaacaaaagta |
2958188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 2957795 - 2957901
Alignment:
| Q |
9 |
gagatgaacaggcgaaaaaagctgcaaaaatccattgaagtctattggcagcaaaatgcattgaaagagacgatttaacaaggttttaaactagaaatat |
108 |
Q |
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| T |
2957795 |
gagatgaaccggcgaaaaaagctgcaaaaatccattgaagtctattggcagcaaaatgcattgaaagaaacgatttaacaaggttttaaactacaaatat |
2957894 |
T |
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| Q |
109 |
atctata |
115 |
Q |
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| T |
2957895 |
atatata |
2957901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 2957977 - 2958066
Alignment:
| Q |
164 |
tcaatggtccaattttcctccacagtcaatacacaatacgagcaaattgccttatagtgagataatagtaaaatcctttcaattagtata |
253 |
Q |
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| T |
2957977 |
tcaatggtccaattttcctgcacagtcaatacacaatacgagcaaattgccttatagtgagatgataggaaaatcctttcaattggtata |
2958066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 2957937 - 2957977
Alignment:
| Q |
105 |
atatatctatagtttcttctcaaaataaaatacaaatagtt |
145 |
Q |
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| T |
2957937 |
atatatatatagtttcttctcaaaataaaatacaaatagtt |
2957977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 31043451 - 31043385
Alignment:
| Q |
354 |
acactcctataacctatggaaacattttttgagttttgcttggactaaaaatcaacattgacttcta |
420 |
Q |
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| T |
31043451 |
acactcccacaagctatgcaaacattttttgagttgtgcttggactaaaaatcaacatggacttcta |
31043385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 273
Target Start/End: Complemental strand, 82445 - 82315
Alignment:
| Q |
147 |
ctttgtgccttgtatactcaatggtccaattttcctccacagtcaatacacaatacgagcaaattgccttatagtgagataatagtaaaat----ccttt |
242 |
Q |
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| T |
82445 |
ctttgagccttgtatactgaatgctccaatttacctacacatttaatacagaataagaaaaaattgacttagagtgaaataatagtaagatcatcctttt |
82346 |
T |
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| Q |
243 |
caattagtatactacctagttagataatagt |
273 |
Q |
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| T |
82345 |
caattagtatactaccaagtgagataatagt |
82315 |
T |
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