View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13027_low_5 (Length: 431)
Name: NF13027_low_5
Description: NF13027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13027_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 59 - 415
Target Start/End: Complemental strand, 12313052 - 12312698
Alignment:
| Q |
59 |
gccaacatttcatatgtgcgggtatggatccccaattttcttttcatgtaatcaaatatcataccacttcatttatcttgggtcacacaagtgacaaaac |
158 |
Q |
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| T |
12313052 |
gccaacatttcatatgtgcgagtatggatccccaattttcttttcatgtaatcaaatatcataccacttcatttatcttgggtcacacaagtgacaaaac |
12312953 |
T |
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| Q |
159 |
tatccctcaagagttttaatattactatatttccagagttcgaaatcaaacatttgcttaagcttaacagatatgtgtttgatttcttcattcactcttg |
258 |
Q |
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| T |
12312952 |
tatccctcaagagttttaatattactatatttctagagttcgaaatcaaacatttgcttaagcttaacagatatgtgtttgatttcttctttcact---- |
12312857 |
T |
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| Q |
259 |
attaatttcttcatgcacttttgtctcaaagctcgctttaattttgta--ataatgtaagtttttgacccctttcattttgggtgtgatggctgactaac |
356 |
Q |
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| T |
12312856 |
attgatttcttcatgcacttttgtctcaaagctcgctttaattttgtaatataatgtaagtttttgacacctttcattttgggtgtgatggccgactaac |
12312757 |
T |
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| Q |
357 |
tactatattatatttgttttacgataaatgannnnnnnaagtagaaaagaagaatccat |
415 |
Q |
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| T |
12312756 |
tactatattatatttgttttacgataaatgatctttttaagtagaaaagaagaatccat |
12312698 |
T |
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