View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13027_low_9 (Length: 337)
Name: NF13027_low_9
Description: NF13027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13027_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 27456261 - 27455974
Alignment:
| Q |
11 |
aatatagatttattaaaattcggctatgtttacgcaatcccataacttcaatatgaaaaagacactctagagtaattgatcaaaacaagagaagcttaga |
110 |
Q |
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| T |
27456261 |
aatatagatttattaaaattcggctatgtttacgcaatcccataagttcaatatgaaaaagacactctagagtaattgatcaaaacaagagaagctttga |
27456162 |
T |
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| Q |
111 |
aaatcagaatttaattataattttcagctattacacgaacttcataaactattcacttcaatactgacacacctctctccttatttaccacagaacacaa |
210 |
Q |
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| T |
27456161 |
aaatcagaatt----------------------caccaacttcataaactattcacttcaatattgacacacctctctgcttatttaccacagaacacaa |
27456084 |
T |
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| Q |
211 |
acagaaacaatgtagaacataaaaaatatacctgattcttagtgagacgtcttctaatagctctggtctttttgggacgaagatccaaaggcaagtactt |
310 |
Q |
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| T |
27456083 |
acagaaacaatgtagaacataaaaaa-atacctgattcttagtgagacgtcttctaatagctctggtctttttgggacgaagatccaaaggcaagtactt |
27455985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 23173340 - 23173421
Alignment:
| Q |
229 |
ataaaaaatatacctgattcttagtgagacgtcttctaatagctctggtctttttgggacgaagatccaaaggcaagtactt |
310 |
Q |
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| T |
23173340 |
ataaaaaatgtacctgatgcttagtgaggcgtcttctaatagctcttgtcttcttgggacggagatccaacggcaagtactt |
23173421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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