View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13028_high_2 (Length: 442)
Name: NF13028_high_2
Description: NF13028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13028_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 1329245 - 1328923
Alignment:
| Q |
1 |
ttgcaattgcgagcattcaataaagataaaataccatgcttacaactggaatggatagaagaacattatgcaatagaaaagagagaagagcatggaaata |
100 |
Q |
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| T |
1329245 |
ttgcaattgcgagcattcaataaagataaaataccatgcttacaattggaatggatagaagaacattatgcaatagaaaagagagaagagcgtggaaata |
1329146 |
T |
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| Q |
101 |
gaaatggtaaagacttaagaacaaatcatatgctacatgtttctttttcatacacttcatacgtcataataaactnnnnnnntctaacagtatgaaagct |
200 |
Q |
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| T |
1329145 |
gaaatggtaaagacttaagaacaaatcatatgctacatgtttctttttcatacacttcatacgtcataataaactaaaaaaatctaacagtatgaaagct |
1329046 |
T |
|
| Q |
201 |
ttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttcttataaattgcgacctcacaacagaaaaactcacctttaa |
300 |
Q |
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| T |
1329045 |
ttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttcttataaattgcgacctcacaacagaaagactcacctttaa |
1328946 |
T |
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| Q |
301 |
cacccataccttcaattatttgg |
323 |
Q |
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| T |
1328945 |
cacccataccttcaattatttgg |
1328923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 331 - 426
Target Start/End: Complemental strand, 1328620 - 1328525
Alignment:
| Q |
331 |
ttgttgttgttgtattcttcaccgagacttagagaggaaaaacaatataaataggaaaatgcctccgttctcttcttgagttgtggactgaatatt |
426 |
Q |
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| T |
1328620 |
ttgttgttgttgtattcttcaccgagacttagagaggaaaaacaatataaataggaaaatgcctccgttctcttcttgagttgtggactgaatatt |
1328525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 193 - 323
Target Start/End: Complemental strand, 44187717 - 44187587
Alignment:
| Q |
193 |
tgaaagctttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttcttataaattgcgacctcacaacagaaaaactc |
292 |
Q |
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| T |
44187717 |
tgaaagctttaaacttggaatgcaagtacaactaattcttaattcagccaacaggaataagattttttttacaaattgccacctcacaacagaaaggctc |
44187618 |
T |
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| Q |
293 |
acctttaacacccataccttcaattatttgg |
323 |
Q |
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| T |
44187617 |
gcctttaacacccatatcttcaattgtttgg |
44187587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 44187976 - 44187879
Alignment:
| Q |
16 |
ttcaataaagataaaataccatgcttacaactggaatggatagaagaacattatgcaatagaaaagagagaagagcatggaaatagaaatggtaaaga |
113 |
Q |
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| T |
44187976 |
ttcaataaagacaaaatactatgcttacaattggaatcgaaagaagaacaatatacaatagaaaagagagaaaaacatagaaataaaaatggtaaaga |
44187879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 334 - 425
Target Start/End: Complemental strand, 44187338 - 44187246
Alignment:
| Q |
334 |
ttgttgttgtattcttcaccgagacttagagaggaaaa-acaatataaataggaaaatgcctccgttctcttcttgagttgtggactgaatat |
425 |
Q |
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| T |
44187338 |
ttgttgttgtattcttcaccaagacttagagaggcaaagacaatataaataggaaaatgcccctattgtcttattgagtcgtggactgaatat |
44187246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 4878476 - 4878422
Alignment:
| Q |
59 |
aagaacattatgcaatagaaaagagagaagagcatggaaatagaaatggtaaaga |
113 |
Q |
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| T |
4878476 |
aagaacaatatgcaatatgaaagagagcagagcattgaaataaaaatggtaaaga |
4878422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 322
Target Start/End: Complemental strand, 44186353 - 44186279
Alignment:
| Q |
248 |
aagaagatttttcttataaattgcgacctcacaacagaaaaactcacctttaacacccataccttcaattatttg |
322 |
Q |
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|||||| ||||||||||||||||| | | |||||| ||| |||| ||||||||||||| | |||||||| |||| |
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| T |
44186353 |
aagaaggtttttcttataaattgcaaagtgacaacaaaaatactcccctttaacacccagatcttcaattgtttg |
44186279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 26542464 - 26542408
Alignment:
| Q |
57 |
agaagaacattatgcaatagaaaagagagaagagcatggaaatagaaatggtaaaga |
113 |
Q |
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| T |
26542464 |
agaagaacatcatacaatagaaaaaagataagagcgtggaaataaaaatggtaaaga |
26542408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 6432874 - 6432798
Alignment:
| Q |
195 |
aaagctttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttcttataaattgc |
271 |
Q |
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| T |
6432874 |
aaagctttaaacttgagatgcaaaaataactaactcctctttcgaccaattggaagaaagtttttcctataaattgc |
6432798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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