View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13028_high_4 (Length: 358)
Name: NF13028_high_4
Description: NF13028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13028_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 337
Target Start/End: Complemental strand, 47290905 - 47290584
Alignment:
| Q |
16 |
agatgaaacactataaaaggatattggatagaaaaagacagtaaactttagacaattcccaaagtattaggctatccctcaaattagggcaaccattgac |
115 |
Q |
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| T |
47290905 |
agatgaaacactataaaaggatattggatagaaagagacagtaaactttagacaattcccaaagtattaggctatccctcaaattagggcaaccattgac |
47290806 |
T |
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| Q |
116 |
ctttgatggcaacaatgacttataatgatgtttagactagaatcttggtgggcacccaaacttatgtttggtacatcatgtcaatttactcgacctgtta |
215 |
Q |
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| T |
47290805 |
ctttgatggcaacaatgacttataatgatgtttagactagaatcttggtggccacccaaacttatgtttggtacatcatgtcaatttactcgacctgtta |
47290706 |
T |
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| Q |
216 |
gcaaaccttcacctttagacttgatgttcggtgttttgttcaatacctaatatcaatttacattgccaaatagagtatcttaacctttttggcttgatgc |
315 |
Q |
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|||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47290705 |
gcaaaccttcacctttagacttgatgctcgatgttgtgttcaatacctaatatcaatttacattgccaaatagagtatcttaacctttttggcttgatgc |
47290606 |
T |
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| Q |
316 |
tcgctcgggcactatatacctg |
337 |
Q |
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|||||||||||||||||||||| |
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| T |
47290605 |
tcgctcgggcactatatacctg |
47290584 |
T |
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