View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13028_high_5 (Length: 326)

Name: NF13028_high_5
Description: NF13028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13028_high_5
NF13028_high_5
[»] chr8 (2 HSPs)
chr8 (19-318)||(44227349-44227648)
chr8 (19-93)||(44231648-44231722)
[»] chr6 (6 HSPs)
chr6 (73-152)||(26734265-26734344)
chr6 (82-152)||(26628298-26628368)
chr6 (33-93)||(31368398-31368457)
chr6 (165-271)||(26628392-26628500)
chr6 (165-271)||(26734368-26734476)
chr6 (86-168)||(28939603-28939682)
[»] chr3 (3 HSPs)
chr3 (82-168)||(22113390-22113476)
chr3 (68-166)||(44669853-44669949)
chr3 (238-283)||(22113558-22113605)


Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 44227349 - 44227648
Alignment:
Q  19 gcaattagctatatatagctttgtaattacatgaactcttaaggaaaatcatttcattttttcagtttcataatatggtatcagattttccctcaaggga 118  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44227349 gcaattagctatatatagctttgtaattacttgaactcttaaagaaaatcatttcattttttcagtttcataatatggtatcagattttccctcaaggga 44227448  T
Q  119 aagtttgttacggtccttgtaaccattttccgttttgcttcgtagatgaatcttcatcttctacctcctttttccgccatttttgttgcttatttcgcaa 218  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44227449 aagtttgttacggtccttgtaaccattttccgttgtgcttcgtagatgaatcttcatcttctacctcctttttccgccatttttgttgcttaattcgcaa 44227548  T
Q  219 cgattcttgttgaatttgtgaagaagcttctagttcttcttcgttattgagttgatttcactcaattttgttctttgattccttgatttctccttcttct 318  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44227549 tgattcttgttgaatttgtgaagaagcttctagttcttcttcgttattgagttgatttcactcaattttgttctttgattccttgatttctccttcttct 44227648  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 44231648 - 44231722
Alignment:
Q  19 gcaattagctatatatagctttgtaattacatgaactcttaaggaaaatcatttcattttttcagtttcataata 93  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44231648 gcaatgagctatatatagctttgtaattacttgaactcttaaggaaaatcatttcattttttcagtttcataata 44231722  T

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Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 26734265 - 26734344
Alignment:
Q  73 cattttttcagtttcataatatggtatcagattttccctcaagggaaagtttgttacggtccttgtaaccattttccgtt 152  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26734265 catttttctagtttgataatatggtatcagattttccctcaagggaaagtttgttacggtccttgtaaccgttttccgtt 26734344  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 26628298 - 26628368
Alignment:
Q  82 agtttcataatatggtatcagattttccctcaagggaaagtttgttacggtccttgtaaccattttccgtt 152  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26628298 agtttgataatatggtatcagattttccctcaagggaaagtttgttacggtccttgtaaccgttttccgtt 26628368  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 31368398 - 31368457
Alignment:
Q  33 atagctttgtaattacatgaactcttaaggaaaatcatttcattttttcagtttcataata 93  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  31368398 atagctttgtaattacttgaactcttaaggaaaatcatttca-tttttcagtttcataata 31368457  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 271
Target Start/End: Original strand, 26628392 - 26628500
Alignment:
Q  165 tgaatcttcatcttctacctcctttttccgcca-tttttgttgct-tatttcgcaacgattcttgttgaatttgtgaagaagcttctagttcttcttcgt 262  Q
    |||||||||||||||  ||| |||||||||||| ||||||||||| ||||   |||| | ||| ||||| |||| ||||||| ||||  ||||||||| |    
T  26628392 tgaatcttcatcttcatccttctttttccgccattttttgttgctctattctacaacaactctcgttgattttgcgaagaagtttctgattcttcttcat 26628491  T
Q  263 tattgagtt 271  Q
    | |||||||    
T  26628492 tgttgagtt 26628500  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 271
Target Start/End: Original strand, 26734368 - 26734476
Alignment:
Q  165 tgaatcttcatcttctacctcctttttccgcca-tttttgttgct-tatttcgcaacgattcttgttgaatttgtgaagaagcttctagttcttcttcgt 262  Q
    |||||||||||||||  ||| |||||||||||| ||||||||||| ||||   |||| | ||| ||||| |||| ||||||| ||||  ||||||||| |    
T  26734368 tgaatcttcatcttcatccttctttttccgccattttttgttgctctattctacaacaactctcgttgattttgcgaagaagtttctgattcttcttcat 26734467  T
Q  263 tattgagtt 271  Q
    | |||||||    
T  26734468 tgttgagtt 26734476  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 168
Target Start/End: Complemental strand, 28939682 - 28939603
Alignment:
Q  86 tcataatatggtatcagattttccctcaagggaaagtttgttacggtccttgtaaccattttccgttttgcttcgtagatgaa 168  Q
    ||||||||| |||| ||||||||| | ||||||||||||||| || |||   ||||| ||||||||| ||||||  |||||||    
T  28939682 tcataatatagtattagattttccattaagggaaagtttgttgcgatcc---taaccgttttccgttgtgcttctcagatgaa 28939603  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 22113390 - 22113476
Alignment:
Q  82 agtttcataatatggtatcagattttccctcaagggaaagtttgttacggtccttgtaaccattttccgttttgcttcgtagatgaa 168  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||| ||| | |||||||||    
T  22113390 agtttcataatatggcatcagattttctctaaagggaaagtttgttacggtccttgtaaccgttttccgttgtgccttgtagatgaa 22113476  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 44669949 - 44669853
Alignment:
Q  68 catttcattttttcagtttcataatatggtatcagattttccctcaagggaaagtttgttacggtccttgtaaccattttccgttttgcttcgtagatg 166  Q
    |||| |||||||  |||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||| || | |||||| ||||||    
T  44669949 cattacatttttctagtttcataat--ggtatcagattttccctctagggaaagtttgttacggtccttgtaaccatttttcgctgtgcttcatagatg 44669853  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 22113558 - 22113605
Alignment:
Q  238 gaagaagcttctagttcttcttcgttattgag--ttgatttcactcaa 283  Q
    |||||||||||| ||||||||||||| |||||  ||||||||||||||    
T  22113558 gaagaagcttcttgttcttcttcgttgttgagttttgatttcactcaa 22113605  T

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