View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13028_low_11 (Length: 230)
Name: NF13028_low_11
Description: NF13028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13028_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 40004142 - 40004352
Alignment:
| Q |
1 |
aagcaaagaatatacataattgagctgctaggtgccaatcttgaaaagcaagtcagaaaaacagttcatccaacatctcctctaggtccaagaactttaa |
100 |
Q |
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| T |
40004142 |
aagcaaagaatatacagaattgagctgctaggtgccaatcttgaaaagcaagtcagaaaaacagttcatccaacatctcctctaggtccaagaactttaa |
40004241 |
T |
|
| Q |
101 |
cagnnnnnnngaagttcatcaaacttttagtggcaccctacaaaatatgaacaaggttgaagaaagatttgctacagtcagaatgattcctttccttttc |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40004242 |
cagaaaaaaagaagttcatcaaacttttagtggcaccctacaaaatatcaacaaggttgaagaaagatttgctacagttagaatgattcctttccttttc |
40004341 |
T |
|
| Q |
201 |
tttaccatttg |
211 |
Q |
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||||||||||| |
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| T |
40004342 |
tttaccatttg |
40004352 |
T |
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