View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13028_low_2 (Length: 878)
Name: NF13028_low_2
Description: NF13028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13028_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 383 - 836
Target Start/End: Original strand, 27726075 - 27726536
Alignment:
| Q |
383 |
agactcttgataactccaagtccaagccatgcctcatgccctcgtctattcccattctgctaaatcaaaactcaactctgtcattgccttccctctcttc |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27726075 |
agactcttgataactccaagtccaagccatgcctcatgccctcgtctattcccattctgctaaatcaaaactcaactctgtcattgccttccctctctgc |
27726174 |
T |
|
| Q |
483 |
aaactttggct--------cttttggtcccgttgaaggatccaaatcacagaaatcaaacgcttttgtaaaagtactttgaaaacttgaattgtgcttca |
574 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||| ||||| |||||||||||||||||||||||||| || |
|
|
| T |
27726175 |
aaactttggctttttgagtcttttggtcccgttgaaggatccaaatcacaaaaagcaaacacttctgtaatagtactttgaaaacttgaattgtgctaca |
27726274 |
T |
|
| Q |
575 |
gtggtaccagtactattacttactttcaacaccatatgaaacagcaaaaaagattgaaaatttgcattttatcttgaaactgcatttttctgatggataa |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27726275 |
gtggtaccagtactattacttactttcaacaccatatgaaacagcaaaaaagattgaaaatttgcattttatcttgaaactgcatttttctgatggataa |
27726374 |
T |
|
| Q |
675 |
agttacaaagaataccaaaacttccattcacaaatacatattacatgagtaacaagtcactgatacaaaatttccaattatcatatggctgaaacaataa |
774 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27726375 |
agttacaaagaataccaaaacttccattcacaaatacatattacatgagtaacaagtcactgatacaaaatttccaattatcatatggctgaaacaataa |
27726474 |
T |
|
| Q |
775 |
ggctcaaactaacattgagaaattgcgacatgttaatctcgttcggtaactgctaaacaaat |
836 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27726475 |
ggctgaaactaacattgagaaattgcgacatgttaatctcgttcggtaactgctaaacaaat |
27726536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 37 - 350
Target Start/End: Original strand, 27725765 - 27726078
Alignment:
| Q |
37 |
tttgtttcatattcactgccttgtccttgttggagtatagcccctttaaattcctaataactcaaacgatgttaagtaaatggtgctttgtgatgaatca |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27725765 |
tttgtttcatattcactgccttgtccttgttggagtatagtccctttaaattcctaataactcaaacgatgttaagtaaatggtgctttgtgatgaatca |
27725864 |
T |
|
| Q |
137 |
catgtttcattgcttcgaattgaaccttccctatgtaattattcaatacatgttactggtgatggaattgaggagcattcaacattactggtcaagattt |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27725865 |
catgtttcattgcttcgaattgaaccttccctatgtaattattcaatgcatgttactggtgatggaattgaggagcattcaacattactggtcaagattt |
27725964 |
T |
|
| Q |
237 |
gcaatggatcctactctatttgggacaacaacttatattcaaactgtcaattaatctcaatcccttgctagtgaagaaaccccttcctgcatggtaatat |
336 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27725965 |
gcaatggatcctactctatttgggacctcaacttatatgcaaactgtcaattaatctcaataacttgctagtcaagaaaccccttcctgcatggtaatat |
27726064 |
T |
|
| Q |
337 |
atatcccaaaagac |
350 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
27726065 |
atatcccaaaagac |
27726078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 355 - 738
Target Start/End: Original strand, 27738016 - 27738410
Alignment:
| Q |
355 |
attaatttttggctcagatgatctgaacagactcttgataactccaagtccaagccatgcctcatgccctcgtctattcccattctgctaaatcaaaact |
454 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||| ||||||||||||||| ||||| ||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
27738016 |
attaacttttggctcagatgctctgaacaaactcttgaaaactccaagtccaagtcatgcaatttgccctcatctattcctattctgctaaatcaaaact |
27738115 |
T |
|
| Q |
455 |
caactctgtcattgccttccctctcttcaaactttggctcttt---------tggtcccgttgaaggatccaaatcacagaaatcaaacgcttttgtaaa |
545 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||| ||| ||||| |
|
|
| T |
27738116 |
caactctgtcattgccttccctctctgcaaactttggctcttttgaggcttttggtcccgttgaaggattcaaatcacagaaagcaaacacttctgtaat |
27738215 |
T |
|
| Q |
546 |
agtactttgaaaacttgaattgtgcttcagtggtaccagtactattacttactttcaacaccatatgaaacagcaaaaaagattgaaaatttgcatttta |
645 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
27738216 |
agtactttgaaaacttgaattgtgattcagtggtaccagtactattacttacttacaacaccatatgaaacggcagaaaagattgaaaatttgcatttta |
27738315 |
T |
|
| Q |
646 |
tcttgaaactgca-tttttctgatggataaagttacaaagaataccaaaacttccattc-acaaatacatattacatgagtaacaagtcactgat |
738 |
Q |
| |
|
|||| |||||||| ||||| | ||||||||| ||||||| ||||||||||||| | ||| | || |||| ||||||||| ||||||||||||||| |
|
|
| T |
27738316 |
tcttcaaactgcatttttttttatggataaaattacaaacaataccaaaactttctttcgaaaagtacacattacatgaataacaagtcactgat |
27738410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 117 - 297
Target Start/End: Original strand, 27737524 - 27737723
Alignment:
| Q |
117 |
tggtgctttgtgatgaatcacatgtttcattgcttcgaattgaaccttccctatgtaattattcaataca-tgttactggtg-----atggaattgagga |
210 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| ||| ||||||||| |
|
|
| T |
27737524 |
tggtgcttggtgatgaatcacatgtttcattgcttcaaattgaaccttccctatgtaattattcaatacacagtgcttggtgatgcaatgcaattgagga |
27737623 |
T |
|
| Q |
211 |
gcattcaacatt-------------actggtcaagatttgcaatggatcctactctatttgggacaacaacttatattcaaactgtcaattaatctcaat |
297 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||| ||||||||| |
|
|
| T |
27737624 |
gcattcaacattgtctaactcatccaatggtcaagatttgcaatggatcctactctatttgggatctcaacttatatgcaaactgacaataaatctcaat |
27737723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 679 - 730
Target Start/End: Complemental strand, 1636914 - 1636862
Alignment:
| Q |
679 |
acaaagaataccaaaacttccattcac-aaatacatattacatgagtaacaag |
730 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1636914 |
acaaagaataccaaaacttccattcacaaaatacatattacatgagtaacaag |
1636862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 27737462 - 27737514
Alignment:
| Q |
37 |
tttgtttcatattcactgccttgtccttgttggagtatagcccctttaaattcc |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
27737462 |
tttgtttcatattcactgccttgtccttgttggagta-agtccctttaaattcc |
27737514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 831 - 860
Target Start/End: Original strand, 27731417 - 27731446
Alignment:
| Q |
831 |
acaaatcacctcatcactgattcaattgag |
860 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27731417 |
acaaatcacctcatcactgattcaattgag |
27731446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 5e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 555 - 729
Target Start/End: Complemental strand, 21250330 - 21250151
Alignment:
| Q |
555 |
aaaacttgaattgtgcttcagtggtaccagtactattacttactttcaacaccatatgaaa-----cagcaaaaaagattgaaaatttgcattttatctt |
649 |
Q |
| |
|
||||||||||||||||| || ||||||| |||||||||||||||| ||||||||||||||| || || | ||||||||| ||||||| |||||||| |
|
|
| T |
21250330 |
aaaacttgaattgtgctccaatggtaccggtactattacttacttacaacaccatatgaaataaaacaacacagaagattgaagatttgcaatttatctt |
21250231 |
T |
|
| Q |
650 |
gaaactgcatttttctgatggataaagttacaaagaataccaaaacttccattcacaaa-tacatattacatgagtaacaa |
729 |
Q |
| |
|
|||| || |||||||||||||||||| ||||||| |||||| || |||||||||||||| || |||||||||||||||||| |
|
|
| T |
21250230 |
gaaattgtatttttctgatggataaaattacaaacaatacc-aaccttccattcacaaagtatatattacatgagtaacaa |
21250151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 551 - 698
Target Start/End: Complemental strand, 21251186 - 21251034
Alignment:
| Q |
551 |
tttgaaaacttgaattgtgcttcagtggtaccagtactattacttactttcaacaccatatgaaa-----cagcaaaaaagattgaaaatttgcatttta |
645 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||| |||||| ||||||| || || ||||||||||| |||||||||||| |
|
|
| T |
21251186 |
tttgaaaacttgaattgtgctttaatggtaccagtactattacttacttataacaccgtatgaaatgaaacaacataaaagattgaagatttgcatttta |
21251087 |
T |
|
| Q |
646 |
tcttgaaactgcatttttctgatggataaagttacaaagaataccaaaacttc |
698 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||| |||||||||||||| |
|
|
| T |
21251086 |
tcttgaaactgcatttttctgattgataaaattacaatcaataccaaaacttc |
21251034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 559 - 694
Target Start/End: Complemental strand, 21252100 - 21251960
Alignment:
| Q |
559 |
cttgaattgtgcttcagtggtaccagtactattacttactttcaacaccatatgaaa-----cagcaaaaaagattgaaaatttgcattttatcttgaaa |
653 |
Q |
| |
|
|||||||| |||| || |||||| ||||||||||||||||| || |||| ||||||| || || |||||||||||||||||||||||||||||||| |
|
|
| T |
21252100 |
cttgaattttgctccaatggtacaagtactattacttacttacatcaccgtatgaaatgaaacaacacaaaagattgaaaatttgcattttatcttgaaa |
21252001 |
T |
|
| Q |
654 |
ctgcatttttctgatggataaagttacaaagaataccaaaa |
694 |
Q |
| |
|
|||||||||||| |||| ||| |||| || |||||||||| |
|
|
| T |
21252000 |
ctgcatttttctaatggtcaaaattactaacaataccaaaa |
21251960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 548 - 674
Target Start/End: Original strand, 3072420 - 3072551
Alignment:
| Q |
548 |
tactttgaaaacttgaattgtgcttcagtggtaccagtactattacttactttcaacaccatatgaaacagcaaaaaagattgaaaatttgca------- |
640 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||| |||||||||||||| |
|
|
| T |
3072420 |
tactttgaaaacttcagttgtgcttctatggtaccagtactattactta----caacaccatatgaagcagcagaaaaaattgaaaatttgcattctatc |
3072515 |
T |
|
| Q |
641 |
--ttttatcttgaaactgcatttttctgatggataa |
674 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
3072516 |
acttttatcttgaaactgcatttttctgattgataa |
3072551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 670 - 738
Target Start/End: Original strand, 3073344 - 3073413
Alignment:
| Q |
670 |
gataaagttacaaagaataccaaaacttccattcacaaa-tacatattacatgagtaacaagtcactgat |
738 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
3073344 |
gataaagttacaaacaataccaaaacttccatccacaaagtacatattacaagagtaacaagtcactgat |
3073413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University