View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13028_low_3 (Length: 526)
Name: NF13028_low_3
Description: NF13028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13028_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 14 - 506
Target Start/End: Complemental strand, 43742631 - 43742148
Alignment:
| Q |
14 |
catcacatagaagacgagttcaagtagcaagaaatgaaggaaaaagatgttgtcgttttgaaggagcaaaactttactagtgtaattgaaaagaaccaat |
113 |
Q |
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| T |
43742631 |
catcacatagaagacgagttcaagtagcaagaaatgaaggaaaaagacgttgtcgttttgaaggagcaaaactttaccagtgtaattgaaaagaaccaat |
43742532 |
T |
|
| Q |
114 |
tccttatggttgagttctatgctccctggtgtggtcactctcaagctctggtgctggagtatgctgcagctgcgactaatgaacattgagttaattgact |
213 |
Q |
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| T |
43742531 |
tccttatggttgagttctatgctccctggtgtggtcactctcaagctctggtgctggagtatgctgcagctgcgactaatgaacattgagttaattgact |
43742432 |
T |
|
| Q |
214 |
taattgaaaaattgggttgggttgaaatcatatgtagaaaatcttaggcaattaatgaggaaaatcaaaatatgaccataaattagtctaaatttccagt |
313 |
Q |
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| T |
43742431 |
taattgaaaaattggattgggttgaaatcatatgtagaaaatcttaggcaattaatgaggaaaatcaaaatatgaccataaattagtctaaatttccagt |
43742332 |
T |
|
| Q |
314 |
tttcatgacatnnnnnnngatgtagaggaattggcgtttaagatcggaagacaatgacttagtgggaaaggattagaaaataagggaagagaaagagact |
413 |
Q |
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| T |
43742331 |
tttcatgacatgaaaaaagatgtagaggaattggcgtttaagatcggaagacaatgacttagtgggaaaggattagaaaataagggaagagaaagagact |
43742232 |
T |
|
| Q |
414 |
gcttgttcaaaccagttaatgagagggaattccacaaattacacaaattaataagtactcctcacaatacaatgttagaagttagaaccaaga |
506 |
Q |
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| T |
43742231 |
gcttgttcaaaccagtaaatgagagggaattc---------cacaaattaataagtactcctcacaatacaatgttagaagttagaaccaaga |
43742148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 21886064 - 21886197
Alignment:
| Q |
56 |
aaagatgttgtcgttttgaaggagcaaaactttactagtgtaattgaaaagaaccaattccttatggttgagttctatgctccctggtgtggtcactctc |
155 |
Q |
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||||||||||||||||||| |||| |||||| |||| ||||||||||| ||||||||| | |||||||| || |||||||| |||||||| || | || |
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| T |
21886064 |
aaagatgttgtcgttttgattgagcgaaacttcactaccgtaattgaaaacaaccaattcgtgatggttgaattttatgctccgtggtgtggacattgtc |
21886163 |
T |
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| Q |
156 |
aagctctggtgctggagtatgctgcagctgcgac |
189 |
Q |
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| T |
21886164 |
aagctttggcgccagagtatgctgcggcggcgac |
21886197 |
T |
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