View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13028_low_5 (Length: 425)
Name: NF13028_low_5
Description: NF13028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13028_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Complemental strand, 24421573 - 24421177
Alignment:
| Q |
19 |
catatttcatcatctactagattatacataagccaaacaaacacatgtttttagcataattaagattctatcaaacaatcttaccatgttctgctctttt |
118 |
Q |
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| T |
24421573 |
catatttcatcatctactagattatacataagccaaacaaacacatgtttttagcataattaagattctatcaaacaatcttaccatgttctgctctttt |
24421474 |
T |
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| Q |
119 |
tattaagcagttatatatttagtaaaattgtccaatcacatagccatatgcttagacttgtgtcagtttgtcccatacataccaaacatatccagttccc |
218 |
Q |
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| T |
24421473 |
tattaagcagttatatatttagtaaaattgtccaatcacatagccatatgcttagacttgtgtcagtttgtcccatacataccaaacatatccagttccc |
24421374 |
T |
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| Q |
219 |
taagtcatatatatatagtattaacttcaaatttaatgtagatgcagactagtttgtctttgttgtttatagctcaagctttttctatcatatacagaaa |
318 |
Q |
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| T |
24421373 |
taagtcatatatatatagtattaacttcaaatttaatgtagatgaagactagtttgtctttgttgtttatagctcaagctttttctatcatatacagaaa |
24421274 |
T |
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| Q |
319 |
acttcataagcttctattgaattacattcttggataaaaatggatgggaaaaactctcttcaaataacaaaagcttctggtgcttatgatgatgatg |
415 |
Q |
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| T |
24421273 |
acttcataagcttctattgaattacattcttggataaaaatggatgggaaaaactctcttcaaataacaaaagcttctggtgcttatgatgatgatg |
24421177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 224 - 415
Target Start/End: Original strand, 24412674 - 24412864
Alignment:
| Q |
224 |
catatatatatagtattaacttcaaatttaatgtagatgcagactagtttgtctttgttgtttatagctcaagctttttctatcatatacagaaaacttc |
323 |
Q |
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| T |
24412674 |
catatatatatagtattaacttcaa-tttaatgtaggtgcagcctagtttgtctttgttgtttatagcacaagtttttcctatcatatacagaaaacttc |
24412772 |
T |
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| Q |
324 |
ataagcttctattgaattacattcttggataaaaatggatgggaaaaactctcttcaaataacaaaagcttctggtgcttatgatgatgatg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24412773 |
ataagcttctattgaattacattcttggataaaaatggatgggaaaaactctcttcaaataacaaaagcttctggtgcttatgatgatgatg |
24412864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 24412412 - 24412604
Alignment:
| Q |
19 |
catatttcatcatctactagattatacataagccaaacaaacacatgtttttagcataattaagatt--------ctatcaaacaatctta---ccatgt |
107 |
Q |
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| T |
24412412 |
catatttcatcatctactagattatacataagccaaacaaacacatgtttttagcataattgagattaacttgaactatcaaacaatcttattaccatgt |
24412511 |
T |
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| Q |
108 |
tctgctctttttattaagcagttatatatttagtaaaattgtccaatcacatagccatatgcttagacttgtgtcagtttgtcccatacatacca |
202 |
Q |
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| T |
24412512 |
gctgctctttttattaagcagttatatatttagtaaaattgtccaatcac--agccatatgcttagacttgtgtcagtttgtcccatacatacca |
24412604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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