View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13029_high_6 (Length: 459)
Name: NF13029_high_6
Description: NF13029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13029_high_6 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Original strand, 39624951 - 39625422
Alignment:
| Q |
19 |
acctcatattcaaggcaggtacaagcagattcaatacaagactcaagagctttgaactcaaacggaagctgcttaggagccgacgcacctgctacgccaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39624951 |
acctcatattcaaggcaggtacaagcagattcaatacaagactcaagagctttgaactcaaacggaagctgcttaggagccgacacacctgctacgccaa |
39625050 |
T |
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| Q |
119 |
ttgattcattatttggaaaatgagtaggactctgcacc---------------------aaaggtttgacttcacaatgactatcaacgtcatcgctccc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39625051 |
ttgattcattatttggaaaatgagtaggactctgcaccgatggcaacaactcctccaacaaaggtttgacttcacaatgactatcaacgtcatcgctccc |
39625150 |
T |
|
| Q |
198 |
ccgcatgggcacttgaatattattagaaagaagaacacgcttttgaagatcttgaagaaagcgaataaaggaagggtcaattgaattaatcataagcact |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39625151 |
ccgcatgggcacttgaatattattagaaagaagaacacgcttttgaagatcttgaagaaagcgaataaagaaagggtcaattgaattaatcataagcact |
39625250 |
T |
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| Q |
298 |
tcat----------aatcgctctaatgtgttctaagttaacaataatggctttttctcgtcctaagatagaagaaggttgagaaagctttgtatcaaaga |
387 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39625251 |
tcattcgaagtgataatcgctctaatgtgttctaagttaacaataatggctttttctcgtcctaagatagaagaaggctgagaaagctttgtatcaaaga |
39625350 |
T |
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| Q |
388 |
ctctaaggtcacgtgcaggtaaacctgttcgtcgcatgatggagtgtttgtcgatatcctcgacacgtgatt |
459 |
Q |
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| T |
39625351 |
ctctaaggtcacgtgcaggtaaacctgttcgtcgcatgatggagtgtttgtcgatatcctcgacacgtgatt |
39625422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Original strand, 39634501 - 39634972
Alignment:
| Q |
19 |
acctcatattcaaggcaggtacaagcagattcaatacaagactcaagagctttgaactcaaacggaagctgcttaggagccgacgcacctgctacgccaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39634501 |
acctcatattcaaggcaggtacaagcagattcaatacaagactcaagagctttgaactcaaacggaagctgcttaggagccgacacacctgctacgccaa |
39634600 |
T |
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| Q |
119 |
ttgattcattatttggaaaatgagtaggactctgcacc---------------------aaaggtttgacttcacaatgactatcaacgtcatcgctccc |
197 |
Q |
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| T |
39634601 |
ttgattcattatttggaaaatgagtaggactctgcaccgatggcaacaactcctccaacaaaggtttgacttcacaatgactatcaacgtcatcgctccc |
39634700 |
T |
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| Q |
198 |
ccgcatgggcacttgaatattattagaaagaagaacacgcttttgaagatcttgaagaaagcgaataaaggaagggtcaattgaattaatcataagcact |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39634701 |
ccgcatgggcacttgaatattattagaaagaagaacacgcttttgaagatcttgaagaaagcgaataaagaaagggtcaattgaattaatcataagcact |
39634800 |
T |
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| Q |
298 |
tcat----------aatcgctctaatgtgttctaagttaacaataatggctttttctcgtcctaagatagaagaaggttgagaaagctttgtatcaaaga |
387 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39634801 |
tcattcgaagtgataatcgctctaatgtgttctaagttaacaataatggctttttctcgtcctaagatagaagaaggctgagaaagctttgtatcaaaga |
39634900 |
T |
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| Q |
388 |
ctctaaggtcacgtgcaggtaaacctgttcgtcgcatgatggagtgtttgtcgatatcctcgacacgtgatt |
459 |
Q |
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| T |
39634901 |
ctctaaggtcacgtgcaggtaaacctgttcgtcgcatgatggagtgtttgtcgatatcctcgacacgtgatt |
39634972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 240 - 459
Target Start/End: Original strand, 40276473 - 40276702
Alignment:
| Q |
240 |
ttgaagatcttgaagaaagcgaataaaggaagggtcaattgaattaatcataagcacttcat----------aatcgctctaatgtgttctaagttaaca |
329 |
Q |
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| T |
40276473 |
ttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacg |
40276572 |
T |
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| Q |
330 |
ataatggctttttctcgtcctaagatagaagaaggttgagaaagctttgtatcaaagactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatgg |
429 |
Q |
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| T |
40276573 |
acaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatgg |
40276672 |
T |
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| Q |
430 |
agtgtttgtcgatatcctcgacacgtgatt |
459 |
Q |
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| T |
40276673 |
agtgtttgtcaatatcttcaacgcgtgatt |
40276702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 40276246 - 40276329
Alignment:
| Q |
19 |
acctcatattcaaggcaggtacaagcagattcaatacaagactcaagagctttgaactcaaacggaagctgcttaggagccgac |
102 |
Q |
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|||||| |||||||||| ||||||| |||||||||||||| |||||||||||| |||||||| || | ||||||||||||||| |
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| T |
40276246 |
acctcagattcaaggcacgtacaagtagattcaatacaagcctcaagagctttaaactcaaaaggtaattgcttaggagccgac |
40276329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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