View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13029_high_7 (Length: 382)
Name: NF13029_high_7
Description: NF13029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13029_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 106 - 326
Target Start/End: Original strand, 40383679 - 40383899
Alignment:
| Q |
106 |
ttgacttattttacacacgtatatatgttgctaacttagactaacctaaaaacatttaggttcaagttagaaagtatgtacttttttatttagacaaaga |
205 |
Q |
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| T |
40383679 |
ttgacttattttacacacatatatatgttgctaacttagaccaacctaaaaacattaaggactaagttagcaagtgtgta-ttttttatttagacaaaaa |
40383777 |
T |
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| Q |
206 |
tactcatttgttactagtgtgaggaagcaagatagagccaccgacgattttccaataagaacatgatcgca-caatgatgaaccttaaacctttatcttt |
304 |
Q |
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| T |
40383778 |
cactcatttgttacttgtgtgaggaagcaagatagggccaccgacgatttttcaataacattatgatcgcaccaatgatcaacattaaaccattatcttt |
40383877 |
T |
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| Q |
305 |
taactttaatcttagatgtact |
326 |
Q |
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| T |
40383878 |
ttactttagtcttggatgtact |
40383899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 40364358 - 40364391
Alignment:
| Q |
18 |
gtttaatgctatttgaatttgttattctaataaa |
51 |
Q |
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| T |
40364358 |
gtttaatgctatttgaatttgttattctaataaa |
40364391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 40383211 - 40383249
Alignment:
| Q |
21 |
taatgctatttgaatttgttattctaataaaaaacaact |
59 |
Q |
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| T |
40383211 |
taatgctatttggatttgttattctaataataaacaact |
40383249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 32537812 - 32537760
Alignment:
| Q |
151 |
ctaaaaacatttaggttcaagttagaaagtatgtacttttttatttagacaaa |
203 |
Q |
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| T |
32537812 |
ctaaaatcattaaggtttaagttagtaaatatgtacttttttatttagacaaa |
32537760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 29916142 - 29916100
Alignment:
| Q |
138 |
aacttagactaacctaaaaacatttaggttcaagttagaaagt |
180 |
Q |
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| T |
29916142 |
aacttagaccaacctaaaaacattaaggttcaagttagcaagt |
29916100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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