View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13029_high_9 (Length: 332)
Name: NF13029_high_9
Description: NF13029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13029_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 4674775 - 4675080
Alignment:
| Q |
12 |
aatactatggctgtaactggtgatgctttaagagatggatcacttggcttgttaaaaccatttgtaacaatgtccactgcatttagagttgcaattgcag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4674775 |
aatactatggctgtaactggtgatgctttaagagatggatcacttggcttgttaaaaccatttgtaacaatgtccactgcatttagagttgcaattgcag |
4674874 |
T |
|
| Q |
112 |
cacctaaactgtgacctgttatagttatgcttatttcttcattcttgtatttttccactaaccttcttacctcacttaagacctgcacagattgataatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4674875 |
cacctaaactgtgacctgttatagttatgcttatttcttcattcttgtatttctccaccaaccttcttacctcacttaagacctgcacagatcgataatt |
4674974 |
T |
|
| Q |
212 |
atcaacatatcatacaacgacgctatgccaatttttnnnnnnngagaagcgctattgtgcaggacaatattcaccacacaacccgcacgacatgttatgt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4674975 |
atcaacatatcatacaacgacgctatgccaattttttaaaaaagagaagcgctattgtgcaggacaatattcaccacacaactcgcacgacatgttatgt |
4675074 |
T |
|
| Q |
312 |
gacata |
317 |
Q |
| |
|
|||||| |
|
|
| T |
4675075 |
gacata |
4675080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 6800770 - 6800716
Alignment:
| Q |
255 |
gagaagcgctattgtgcaggacaatattcaccacacaacccgcacgacatgttat |
309 |
Q |
| |
|
|||||| | ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6800770 |
gagaagtgttattgtgcacgacaatattcaccacacaacccgcacgacatgttat |
6800716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 34548233 - 34548310
Alignment:
| Q |
84 |
tccactgcatttagagttgcaattgcagcacctaaactgtgacctgttatagttatgcttatttcttcattcttgtat |
161 |
Q |
| |
|
||||||| | ||| |||||||| |||| |||| |||||||| || |||| ||||||||| |||||||||||||||||| |
|
|
| T |
34548233 |
tccactgaacttatagttgcaagtgcaccacccaaactgtgtccagttacagttatgctaatttcttcattcttgtat |
34548310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 5408858 - 5408898
Alignment:
| Q |
255 |
gagaagcgctattgtgcaggacaatattcaccacacaaccc |
295 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| |||||| |
|
|
| T |
5408858 |
gagaagtgctattgtgcacgacaatattcaccacgcaaccc |
5408898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University