View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13029_low_1 (Length: 897)

Name: NF13029_low_1
Description: NF13029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13029_low_1
NF13029_low_1
[»] chr7 (2 HSPs)
chr7 (688-879)||(32139829-32140020)
chr7 (450-542)||(22297851-22297943)
[»] chr8 (3 HSPs)
chr8 (450-666)||(40600487-40600704)
chr8 (450-491)||(14706279-14706320)
chr8 (463-512)||(16910287-16910336)
[»] chr5 (1 HSPs)
chr5 (450-666)||(38558947-38559165)
[»] chr3 (14 HSPs)
chr3 (450-587)||(53343106-53343244)
chr3 (205-401)||(24733881-24734080)
chr3 (31-262)||(24634305-24634536)
chr3 (450-586)||(52717623-52717760)
chr3 (160-262)||(24677062-24677164)
chr3 (19-213)||(24687564-24687758)
chr3 (450-586)||(32558219-32558357)
chr3 (31-249)||(24672782-24673000)
chr3 (31-261)||(24679976-24680206)
chr3 (513-583)||(7050462-7050533)
chr3 (31-262)||(24656409-24656640)
chr3 (618-666)||(53343249-53343297)
chr3 (450-494)||(45781551-45781595)
chr3 (450-493)||(7050983-7051026)
[»] chr1 (2 HSPs)
chr1 (450-586)||(8641811-8641948)
chr1 (450-544)||(45500661-45500758)
[»] chr4 (1 HSPs)
chr4 (451-540)||(21838206-21838295)
[»] chr6 (1 HSPs)
chr6 (455-505)||(14050191-14050241)
[»] chr2 (2 HSPs)
chr2 (450-494)||(1522396-1522440)
chr2 (456-544)||(10174650-10174738)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 2e-94; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 688 - 879
Target Start/End: Complemental strand, 32140020 - 32139829
Alignment:
Q  688 tgaaactccattatcacataacccacggtttcaaatttcaatcactgcaactcaaaaagaaaattttcatcaatcaccagcctccattcttgtgtgtttt 787  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||    
T  32140020 tgaaactccattatcacataacccacggtttcaaatttcaatcactgcaacccaaaaagaaaattttcatcaatcaccaccctccattctcgtgtgtttt 32139921  T
Q  788 ctgaacaaaattctacaaagggctatcgagtcccccttttcttttttcttcttctgtcatgttcacgttaaacttaaaattgatatctaatt 879  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32139920 ctgaacaaaattctacaaagggctatcgagtcccccttttcttttttcttcttctgtcatgttcacgttaaacttaaaattgttatctaatt 32139829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 450 - 542
Target Start/End: Complemental strand, 22297943 - 22297851
Alignment:
Q  450 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatc-agatttaaattaaaggtttagatgtgttaga 542  Q
    |||||||||||  ||||||||||| ||| |||||||||||||||| || |||||| |||||| |||| | | ||||||||||||||| ||||||    
T  22297943 gtggattctagagtgaaccatcaattaagtggttcatcggtggaccacttttatataccatcaagatat-atttaaaggtttagatgagttaga 22297851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 170; Significance: 9e-91; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 450 - 666
Target Start/End: Complemental strand, 40600704 - 40600487
Alignment:
Q  450 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttagagacaaa- 548  Q
    ||||||| |||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||||||     
T  40600704 gtggattttaggatgaaccatcaaataagtggttcatcggtggaccatctttatacaccatcaaatttaaattaaaggtttagacgtgttagagacaaaa 40600605  T
Q  549 gtgagaacacaagtatatttttgcacactatccttgttatcagcctcatctttctcacgtttgactctgtgattctgatgagttttacaacaatgttacc 648  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40600604 gtgagaacacaaatatatttttgcacaatatccttgttatcagcctcatctttctcacgtttgactctgtgattctgatgagttttacaacaatgttaca 40600505  T
Q  649 accacaaaatacattgcc 666  Q
    ||||||||||| ||||||    
T  40600504 accacaaaatatattgcc 40600487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 14706279 - 14706320
Alignment:
Q  450 gtggattctaggatgaaccatcaaataaatggttcatcggtg 491  Q
    |||||||||||| |||||||||||| |||| |||||||||||    
T  14706279 gtggattctagggtgaaccatcaaacaaatagttcatcggtg 14706320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 512
Target Start/End: Original strand, 16910287 - 16910336
Alignment:
Q  463 tgaaccatcaaataaatggttcatcggtggactacctttatacaccatca 512  Q
    ||||||||||| ||| |||||||||||||||| |||||| || |||||||    
T  16910287 tgaaccatcaactaagtggttcatcggtggaccacctttgtataccatca 16910336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 450 - 666
Target Start/End: Original strand, 38558947 - 38559165
Alignment:
Q  450 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttagagac-aaa 548  Q
    ||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38558947 gtggattctaggatgaaccattaaataagtggttcatcggtggaccacctttatacaccatcagatttaaattaaaggtttagatgtgttagagacaaaa 38559046  T
Q  549 gtgagaacac-aagtatatttttgcacactatccttgttatcagcctcatctttctcacgtttgactctgtgattctgatgagttttacaacaatgttac 647  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||    
T  38559047 gtgagaacacaaagtatatttttgcacactatccttgttgtcagcctcatctttctcacgtttggctttgtaattctgatgagttttacaacaatgttac 38559146  T
Q  648 caccacaaaatacattgcc 666  Q
     ||| ||||||||||||||    
T  38559147 aaccgcaaaatacattgcc 38559165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 450 - 587
Target Start/End: Original strand, 53343106 - 53343244
Alignment:
Q  450 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttagagac-aaa 548  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  53343106 gtggattctaggatgaaccatcaaataagtggttcatcggtggaccacctttatacaccatcagatttaaattaaaggtttaaatgtgttagagacaaaa 53343205  T
Q  549 gtgagaacacaagtatatttttgcacactatccttgtta 587  Q
    |||||||||||||||||||||||||||||||||||||||    
T  53343206 gtgagaacacaagtatatttttgcacactatccttgtta 53343244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 205 - 401
Target Start/End: Original strand, 24733881 - 24734080
Alignment:
Q  205 cgaagccaattccatgctcatcagaattgtataagctttatgcatactcattttgtgtttcccttgatcctgtgattggagaatgagttttgnnnnnnnn 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  24733881 cgaagccaattccatgctcatcagaattgtataagctttatgcatactcattttgtgtttcccttgatcctgtgattggagaatgagttttgaaaaaaaa 24733980  T
Q  305 nnt-aaaga-gttgtccataaatag-annnnnnnnnnctgatggaaaatatgtgacgtaggaagtgttgtgaaactttcgaacaaaactgtgatgcttta 401  Q
      | ||||| |||||||||||||||            ||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  24733981 aataaaagaggttgtccataaatagttttttttttttctgatggaaaatatgtgacgtagaaagtgttgtccaactttcgaacaaaactgtgatgcttta 24734080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 31 - 262
Target Start/End: Original strand, 24634305 - 24634536
Alignment:
Q  31 aagtgtctcacatgcaacaagcccggaaaagtggaatatgatcgtagtacttgggaggctgaagtcagccatggttgtaactgcgtgacaaaatagagct 130  Q
    ||||||||||||| ||| ||  || |||||||||||||||||| ||||| |||| | ||| | |||||||||||||| |||||| |||||||||| ||      
T  24634305 aagtgtctcacatccaataacaccagaaaagtggaatatgatcatagtagttggtaagctcatgtcagccatggttgcaactgcatgacaaaatacagaa 24634404  T
Q  131 gttaaaaacaagggaaaagttggatgtgattgttggaaggggtttgtatttgatccttgatacttaattccaatcgaagccaattccatgctcatcagaa 230  Q
    || ||||||| |  | || ||||    ||||||||||| |||||  ||||||| ||||||||| |||||||||| ||| |||| ||||  ||||||||||    
T  24634405 gtaaaaaacaggaaacaaattggggaagattgttggaaagggttgttatttgaaccttgatacataattccaattgaacccaactccaaactcatcagaa 24634504  T
Q  231 ttgtataagctttatgcatactcattttgtgt 262  Q
    | ||||| |||||||| |||||||||||||||    
T  24634505 tagtatatgctttatggatactcattttgtgt 24634536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 450 - 586
Target Start/End: Complemental strand, 52717760 - 52717623
Alignment:
Q  450 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttaga-gacaaa 548  Q
    |||||||||||| ||||||||||| |||||||||||| | ||||| || ||| ||||||||  ||||||||||||||||||||||||||||||  | |||    
T  52717760 gtggattctagggtgaaccatcaactaaatggttcatggatggaccacttttgtacaccattcgatttaaattaaaggtttagatgtgttagacaaaaaa 52717661  T
Q  549 gtgagaacacaagtatatttttgcacactatccttgtt 586  Q
     |||||||||||||||| || |||||||||||||||||    
T  52717660 atgagaacacaagtatacttctgcacactatccttgtt 52717623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 160 - 262
Target Start/End: Original strand, 24677062 - 24677164
Alignment:
Q  160 ttgttggaaggggtttgtatttgatccttgatacttaattccaatcgaagccaattccatgctcatcagaattgtataagctttatgcatactcattttg 259  Q
    ||||||||| ||||| || ||||| |||||| ||||||| ||||| |||||||| |||| ||| |||||||| |||||||||||||||||||||||||||    
T  24677062 ttgttggaatgggttggtgtttgaaccttgacacttaataccaatggaagccaactccaagctgatcagaatagtataagctttatgcatactcattttg 24677161  T
Q  260 tgt 262  Q
    |||    
T  24677162 tgt 24677164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 24687564 - 24687758
Alignment:
Q  19 gagattccacaaaagtgtctcacatgcaacaagcccggaaaagtggaatatgatcgtagtacttgggaggctgaagtcagccatggttgtaactgcgtga 118  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| | | | ||||||||  ||| || |||  | |||    
T  24687564 gagaatccataaaagtgtctcacatgcaacaatcccggaaaagtggaatatgatcatagtacttggtaaggtcaagtcagctgtggatgaaacgacatga 24687663  T
Q  119 caaaatagagctgttaaaaacaagggaaaagttggatgtgattgttggaaggggtttgtatttgatccttgatacttaattccaatcgaagccaa 213  Q
    ||||| | || ||| ||||| |     || ||| |  |||||||||||||||| || || ||| | |||||||||||||||||||||||| ||||    
T  24687664 caaaagatagatgtcaaaaatagcaacaaggtttggggtgattgttggaagggattagtgtttaaaccttgatacttaattccaatcgaacccaa 24687758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 450 - 586
Target Start/End: Original strand, 32558219 - 32558357
Alignment:
Q  450 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttag--agacaa 547  Q
    |||||||||||| ||||||||||| ||| ||||||| ||  |||  || ||| ||||||||  |||||||||||||||||||||| ||||||  | | ||    
T  32558219 gtggattctagggtgaaccatcaactaagtggttcaccgacggatcacttttgtacaccattcgatttaaattaaaggtttagatatgttagacaaaaaa 32558318  T
Q  548 agtgagaacacaagtatatttttgcacactatccttgtt 586  Q
    | |||||||| ||||||| || |||||||||||||||||    
T  32558319 aatgagaacataagtatacttctgcacactatccttgtt 32558357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 31 - 249
Target Start/End: Original strand, 24672782 - 24673000
Alignment:
Q  31 aagtgtctcacatgcaacaagcccggaaaagtggaatatgatcgtagtacttgggaggctgaagtcagccatggttgtaactgcgtgacaaaatagagct 130  Q
    ||||||||||||| |||| |  ||||||||||||||||||||| ||||| ||||   ||| | |||||| ||||||| |||  | ||||||||||||||     
T  24672782 aagtgtctcacatccaactaaaccggaaaagtggaatatgatcatagtagttggcgagctcatgtcagcgatggttgcaacgacatgacaaaatagagca 24672881  T
Q  131 gttaaaaacaagggaaaagttggatgtgattgttggaaggggtttgtatttgatccttgatacttaattccaatcgaagccaattccatgctcatcagaa 230  Q
    ||||||||||     | |  ||    |||||||||||||||||| || ||| | |||||||||||||||||||| ||||| || || | | |||| ||||    
T  24672882 gttaaaaacagcaacataagtgaggatgattgttggaaggggttggtgtttaaaccttgatacttaattccaattgaagctaactctaaggtcataagaa 24672981  T
Q  231 ttgtataagctttatgcat 249  Q
    | ||||| |||||||||||    
T  24672982 tagtatatgctttatgcat 24673000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 31 - 261
Target Start/End: Original strand, 24679976 - 24680206
Alignment:
Q  31 aagtgtctcacatgcaacaagcccggaaaagtggaatatgatcgtagtacttgggaggctgaagtcagccatggttgtaactgcgtgacaaaatagagct 130  Q
    ||||||||||||  |||| |  ||||||||||||||||||||| ||||| |||| | ||| | |||||||||||||| |||| | |||||||||| ||      
T  24679976 aagtgtctcacaaccaactaaaccggaaaagtggaatatgatcatagtagttggcaagctcatgtcagccatggttgcaactacatgacaaaatacagaa 24680075  T
Q  131 gttaaaaacaagggaaaagttggatgtgattgttggaaggggtttgtatttgatccttgatacttaattccaatcgaagccaattccatgctcatcagaa 230  Q
    || | ||||| |  | || | ||    ||||||||||| ||||| |||| ||| ||||||||| |||||||||| ||   ||| |||| |||||| ||||    
T  24680076 gtaagaaacaggaaacaaataggggaagattgttggaaagggttggtatctgaaccttgatacataattccaattgagctcaactccaagctcatgagaa 24680175  T
Q  231 ttgtataagctttatgcatactcattttgtg 261  Q
    | ||||| |||||||  | ||||||||||||    
T  24680176 tagtatatgctttatagaaactcattttgtg 24680206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 513 - 583
Target Start/End: Original strand, 7050462 - 7050533
Alignment:
Q  513 gatttaaattaaaggtttagatgtgttaga-gacaaagtgagaacacaagtatatttttgcacactatcctt 583  Q
    ||||||||||||||||||||||||||||||  | ||| |||||||||||||||| || ||||||||||||||    
T  7050462 gatttaaattaaaggtttagatgtgttagacaaaaaaatgagaacacaagtatacttctgcacactatcctt 7050533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 262
Target Start/End: Original strand, 24656409 - 24656640
Alignment:
Q  31 aagtgtctcacatgcaacaagcccggaaaagtggaatatgatcgtagtacttgggaggctgaagtcagccatggttgtaactgcgtgacaaaatagagct 130  Q
    ||||||||||||| ||| ||  || |||||||| ||||||| | ||||| || ||| ||| | |||||||||||||| |||||| |||||||||  |||     
T  24656409 aagtgtctcacatccaataacaccagaaaagtgaaatatgaacatagtagttaggaagctcatgtcagccatggttgcaactgcatgacaaaatctagca 24656508  T
Q  131 gttaaaaacaagggaaaagttggatgtgattgttggaaggggtttgtatttgatccttgatacttaattccaatcgaagccaattccatgctcatcagaa 230  Q
    || |||||||     | |  |||   | |||||||||||||||| || ||| | ||||| ||||| | |||||| ||| |||| || | | |||| ||||    
T  24656509 gtcaaaaacagcaacataagtggggataattgttggaaggggttggtgtttaaaccttggtactttactccaattgaacccaactctaaggtcataagaa 24656608  T
Q  231 ttgtataagctttatgcatactcattttgtgt 262  Q
    | ||||| ||||||||||||||||||||||||    
T  24656609 tagtatatgctttatgcatactcattttgtgt 24656640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 618 - 666
Target Start/End: Original strand, 53343249 - 53343297
Alignment:
Q  618 tgattctgatgagttttacaacaatgttaccaccacaaaatacattgcc 666  Q
    |||||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  53343249 tgattccgatgagttttacaacaatgttacaaccacaaaatatattgcc 53343297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 450 - 494
Target Start/End: Original strand, 45781551 - 45781595
Alignment:
Q  450 gtggattctaggatgaaccatcaaataaatggttcatcggtggac 494  Q
    |||||||||||| |||||||||||| |||||||||| ||||||||    
T  45781551 gtggattctagggtgaaccatcaaacaaatggttcaccggtggac 45781595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 450 - 493
Target Start/End: Complemental strand, 7051026 - 7050983
Alignment:
Q  450 gtggattctaggatgaaccatcaaataaatggttcatcggtgga 493  Q
    |||||||||||| ||||||||||||||| || ||||||||||||    
T  7051026 gtggattctagggtgaaccatcaaataagtgattcatcggtgga 7050983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 450 - 586
Target Start/End: Complemental strand, 8641948 - 8641811
Alignment:
Q  450 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttaga-gacaaa 548  Q
    |||||||||||| ||||||||||| ||| |||||   || ||||| || ||| ||||||||  ||||||||||||||||||||||||||||||  | |||    
T  8641948 gtggattctagggtgaaccatcaactaagtggttttccgatggaccacttttgtacaccatttgatttaaattaaaggtttagatgtgttagacaaaaaa 8641849  T
Q  549 gtgagaacacaagtatatttttgcacactatccttgtt 586  Q
     |||||||||||||||| ||  | ||||||||||||||    
T  8641848 atgagaacacaagtatacttcaggacactatccttgtt 8641811  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 450 - 544
Target Start/End: Complemental strand, 45500758 - 45500661
Alignment:
Q  450 gtggattctaggatgaaccatcaaataaatggttcatcggtg---gactacctttatacaccatcagatttaaattaaaggtttagatgtgttagaga 544  Q
    ||||||| |||| ||||||||||||||| |||||||  | ||   ||| || |||||||| |||| ||||||||||||| ||||| ||||||||||||    
T  45500758 gtggattttaggttgaaccatcaaataagtggttcactgatgatggaccacttttatacatcatccgatttaaattaaaagtttaaatgtgttagaga 45500661  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 451 - 540
Target Start/End: Complemental strand, 21838295 - 21838206
Alignment:
Q  451 tggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatc-agatttaaattaaaggtttagatgtgtta 540  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| || |||||| |||||| |||| | | ||||||||||||||| ||||    
T  21838295 tggattctaggatgaaccatcaattaagtggttcatcggtggaccacttttatataccatcaagatat-atttaaaggtttagatgagtta 21838206  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 455 - 505
Target Start/End: Original strand, 14050191 - 14050241
Alignment:
Q  455 ttctaggatgaaccatcaaataaatggttcatcggtggactacctttatac 505  Q
    |||||||||||||||||||| || ||||||||||||| ||||| |||||||    
T  14050191 ttctaggatgaaccatcaaacaagtggttcatcggtgaactacttttatac 14050241  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 450 - 494
Target Start/End: Complemental strand, 1522440 - 1522396
Alignment:
Q  450 gtggattctaggatgaaccatcaaataaatggttcatcggtggac 494  Q
    ||||||||||||||||||||||||| || ||||||| ||||||||    
T  1522440 gtggattctaggatgaaccatcaaacaagtggttcaccggtggac 1522396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 456 - 544
Target Start/End: Complemental strand, 10174738 - 10174650
Alignment:
Q  456 tctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttagaga 544  Q
    |||||| ||||||||||| ||||||||||| |||||||| || |||||  ||| ||||||| |  | |||||||| |||| ||||||||    
T  10174738 tctagggtgaaccatcaactaaatggttcaccggtggaccacttttatttaccgtcagattaatttaaaaggtttggatgagttagaga 10174650  T

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