View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13029_low_16 (Length: 248)
Name: NF13029_low_16
Description: NF13029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13029_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 22829556 - 22829801
Alignment:
| Q |
1 |
agttgatgagcgggatattagacatcctttctaaaactgataagggtttaaaaatgatgtaagaaaagaaatcttaacatgataacatagaaacgtcaca |
100 |
Q |
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| T |
22829556 |
agttgatgagcgggatattagacatcctttctaaaattgataagggttaaaaaatgatgtaagagaagaaatcttaacatgataacaaagaaacgtcaca |
22829655 |
T |
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| Q |
101 |
aaa--ttgttgaaagataaaaatgtaggatgttttgacttgttgaaagaaatagatgttgaacttgctgcaaattagctacataaagatgaaaacatggt |
198 |
Q |
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||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
22829656 |
aaaaattgttgaaagataaaaatataggatgttttgacttgttgaaagaaatagatgttgaacctgctgcaaattagctacatatagatgaaaacatggt |
22829755 |
T |
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| Q |
199 |
tnnnnnnntaaatgatgaaaaatcgatgcagctcccctatgctact |
244 |
Q |
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| T |
22829756 |
taaaaaaataaatgatgaaaaatcgatgcagcacccttttgctact |
22829801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 22837293 - 22837469
Alignment:
| Q |
23 |
catcctttctaaaactgataagggtttaaaaatgatgtaagaaaagaaatcttaacatgataacatagaaacgtcacaaaattgttgaaagataaaaatg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
22837293 |
catcctttctaaaactgataagggtttaaaaatgatgtaagagaagaaatcttaacatgataacaaagaaacgtcacaaaattgttgaaatataaaaatg |
22837392 |
T |
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| Q |
123 |
taggatgttttgacttgttgaaagaaatagatgttgaacttgctgcaaattagctacataaagatgaaaacatggtt |
199 |
Q |
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| T |
22837393 |
taggatgttttgacttgttgaaagaaatagatgttgaacctgctgcaaattagctacatatagatgaaatcatggtt |
22837469 |
T |
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