View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13029_low_19 (Length: 239)
Name: NF13029_low_19
Description: NF13029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13029_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 24653762 - 24653986
Alignment:
| Q |
1 |
tataagaattttacccctagtttcttgcttcacaaccaaagtacgctcatgagatcatttgtcaaatttctcttgatataaataagaatatatatgttat |
100 |
Q |
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| T |
24653762 |
tataagaattttacccctagtttcttgcttcacaaccaaagtacgctcatgaggccatttgtcaaatttttcttgatataaataagaatatatatgttat |
24653861 |
T |
|
| Q |
101 |
tgtaccatgctcttggagcttgcttgagactatatagagctttcttcggtttatacactttannnnnnnnnnnnctctttagaacaattgcctatggttt |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24653862 |
tgtaccatgctcttggagcttgcttgagaccatatagagctttctttggtttatacactttatttttctcttttctctttagaacaattgcctatggttt |
24653961 |
T |
|
| Q |
201 |
aagacacattttgtaatgtttttat |
225 |
Q |
| |
|
||| ||||||||||||| ||||||| |
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| T |
24653962 |
aaggcacattttgtaatatttttat |
24653986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 24653999 - 24654036
Alignment:
| Q |
188 |
ttgcctatggtttaagacacattttgtaatgtttttat |
225 |
Q |
| |
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|||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
24653999 |
ttgcctatggtttaaggcacattttgtaatatttttat |
24654036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 3826219 - 3826175
Alignment:
| Q |
178 |
tttagaacaattgcctatggtttaagacacattttgtaatgtttt |
222 |
Q |
| |
|
||||||||| ||| |||||||||||| ||||||||||||||||| |
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| T |
3826219 |
tttagaacatttgtctatggtttaagggacattttgtaatgtttt |
3826175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 26271222 - 26271178
Alignment:
| Q |
178 |
tttagaacaattgcctatggtttaagacacattttgtaatgtttt |
222 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||| |
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|
| T |
26271222 |
tttagaacaattgtctatggtttaagggtcattttgtaatgtttt |
26271178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 10828532 - 10828488
Alignment:
| Q |
178 |
tttagaacaattgcctatggtttaagacacattttgtaatgtttt |
222 |
Q |
| |
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|||||||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
10828532 |
tttagaacaattgcatatggtttaaaggacattttgtaatgtttt |
10828488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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