View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13029_low_2 (Length: 892)
Name: NF13029_low_2
Description: NF13029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13029_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 4e-96; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 437 - 864
Target Start/End: Original strand, 24653697 - 24654143
Alignment:
| Q |
437 |
aaataatatttaatacaaacatc-agagcatgttctggagaaagctaaaagtctgctcgatatcaatatagtc-----attccaaatcaggttccccaac |
530 |
Q |
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| T |
24653697 |
aaataattttttatacaaacatctagagtatgttctggagaaagctaaaagtctgtttgatgtcaatatagccattatattccaaatcaggttccccagc |
24653796 |
T |
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| Q |
531 |
tccaaatttagctttacttttgtaaaaggaaagatgtgtaaatatgagcttaaagtt-ttagaattcgaaagagataggttacttagctgcatcctaaaa |
629 |
Q |
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| T |
24653797 |
tccaaatttagctttatttttataaaaggaaagatgtataaatatgagcctatagttattagaagacaaaagagatagattacttagcttcatcctaaaa |
24653896 |
T |
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| Q |
630 |
atcattgagcataaaatccttagacgaataattgattggtaag--------------tcacactcacacagattcactaaaaacatcggttaaaatgaag |
715 |
Q |
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| T |
24653897 |
atccttgagcttggaatccttcaacaaataattgattggtaagtcacacagtgtgactcacactcatactgattcgctaaaaacatcatttaaaatgaac |
24653996 |
T |
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| Q |
716 |
aagctgattttttattaagaaaactgtgatcaatattcactaataacatttatatttagtatgaaaatctaccttagagcagcagggaaggcatagctga |
815 |
Q |
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| T |
24653997 |
aagctga--ttttattaaaaacactatgatcaatattcactaataacatttagatttagtaagaaaatctaccttagagcagcagggaagacatagctga |
24654094 |
T |
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| Q |
816 |
taggaataatgtcactgagcagtctacttctggatctttaagcagcata |
864 |
Q |
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| T |
24654095 |
aagaaataatgtcactgagcagactgcctcttgaactttaagcagcata |
24654143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 738 - 829
Target Start/End: Original strand, 24682624 - 24682715
Alignment:
| Q |
738 |
actgtgatcaatattcactaataacatttatatttagtatgaaaatctaccttagagcagcagggaaggcatagctgataggaataatgtca |
829 |
Q |
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| T |
24682624 |
actgtgatcaatattcactaataatatttagatttagtaagaaaatctaccttagagcagcagggaaggcatagctgataggaataatgtca |
24682715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 24639473 - 24639556
Alignment:
| Q |
297 |
cagcttggttcctacaaacgaaaaagacaaccaaatagtattggacacaaaatcaaaaacttcatctcatgcacaaatgttata |
380 |
Q |
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| T |
24639473 |
cagctcggatcctacaaatgtaaaagaccaccaactggtatttgacataaaattaaaaacttcaactcatgaacaaatgttata |
24639556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 324 - 390
Target Start/End: Original strand, 24716186 - 24716252
Alignment:
| Q |
324 |
caaccaaatagtattggacacaaaatcaaaaacttcatctcatgcacaaatgttatatgaaatatca |
390 |
Q |
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| T |
24716186 |
caaccaaatagtatttgacataaaataaaagacttctactcatgcacaaattttatgtgaaatatca |
24716252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 24637576 - 24637632
Alignment:
| Q |
345 |
aaaatcaaaaacttcatctcatgcacaaatgttatatgaaatatcagaccgcaaata |
401 |
Q |
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| T |
24637576 |
aaaataaaaaacttcaactaatgcacaaatgttatgtgaaatatcataccccaaata |
24637632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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