View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13029_low_20 (Length: 238)
Name: NF13029_low_20
Description: NF13029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13029_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5573414 - 5573193
Alignment:
| Q |
1 |
tggctatattattcttaaatttaatctctctttttaattaagctcaaactcaagtccttttgattgcagctcaacttcttggatttgagaatttcattcc |
100 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5573414 |
tggctatattattatcaaatttaatctctctttttaattaagctcaaactcaagtccttttgattgcagctcaacttcttggatttgagaatttcattcc |
5573315 |
T |
|
| Q |
101 |
accatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgcatctggcggagctggaattcgtatggagacatactcggctaaggtttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5573314 |
accatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgcatctggcggagctggaattcgtatggagacatactcagctaaggtttaa |
5573215 |
T |
|
| Q |
201 |
attagtttttagtagatgatta |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
5573214 |
attagtttttagtagatgatta |
5573193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 63 - 222
Target Start/End: Complemental strand, 5593089 - 5592930
Alignment:
| Q |
63 |
attgcagctcaacttcttggatttgagaatttcattccaccatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgcatctggcggag |
162 |
Q |
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||||||||||| | ||||| |||||||| ||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593089 |
attgcagctcagttacttggttttgagaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgtgaactatgcatctggcggag |
5592990 |
T |
|
| Q |
163 |
ctggaattcgtatggagacatactcggctaaggtttaaattagtttttagtagatgatta |
222 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5592989 |
ctggaattcgtatggagacatactcggctaaggtttaaattagtttttagtagatgatta |
5592930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 5576443 - 5576313
Alignment:
| Q |
52 |
aagtccttttgattgcagctcaacttcttggatttgagaatttcattccaccatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgc |
151 |
Q |
| |
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|||| ||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| | |||||||||||||||||||||||| |||||||| |
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| T |
5576443 |
aagttctttttattgcagctcagcttcttggttttgagaaattcattccaccctttgcaaacattaatggttcagacatactcaaaggtgttaactatgc |
5576344 |
T |
|
| Q |
152 |
atctggcggagctggaattcgtatggagaca |
182 |
Q |
| |
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|||||| | ||||||||||||||| |||||| |
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| T |
5576343 |
atctggtgcagctggaattcgtatcgagaca |
5576313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 58 - 199
Target Start/End: Complemental strand, 5586858 - 5586717
Alignment:
| Q |
58 |
ttttgattgcagctcaacttcttggatttgagaatttcattccaccatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgcatctgg |
157 |
Q |
| |
|
||||||||| |||||| |||||||| |||||||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||||||| |
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| T |
5586858 |
ttttgattgtagctcagcttcttggctttgagaacttcattccaccatttgcaaacattaatggctcagacatactcaaaggtgtgaactacgcatctgg |
5586759 |
T |
|
| Q |
158 |
cggagctggaattcgtatggagacatactcggctaaggttta |
199 |
Q |
| |
|
|| |||||||||||||| |||||| | |||||||||||| |
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| T |
5586758 |
cgcagctggaattcgtaccgagacaagcatggctaaggttta |
5586717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 5582606 - 5582483
Alignment:
| Q |
58 |
ttttgattgcagctcaacttcttggatttgagaatttcattccaccatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgcatctgg |
157 |
Q |
| |
|
|||| ||||||||||| ||||||| |||||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||| | |
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| T |
5582606 |
tttttattgcagctcagcttcttgt-tttgagaacttcattctaccatttgcaaacattagtggttcagacatactctaaggtgtgaactatgcatctcg |
5582508 |
T |
|
| Q |
158 |
cggagctggaattcgtatggagaca |
182 |
Q |
| |
|
||||||||||||||| | |||||| |
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| T |
5582507 |
tggagctggaattcgtgtcgagaca |
5582483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 60 - 182
Target Start/End: Original strand, 12059434 - 12059556
Alignment:
| Q |
60 |
ttgattgcagctcaacttcttggatttgagaatttcattccaccatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgcatctggcg |
159 |
Q |
| |
|
|||||||||||||| ||| |||||||| |||| ||||||||| |||||||||||| | ||||||||||||||||| || ||||||||||||||| | | |
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| T |
12059434 |
ttgattgcagctcaccttgttggattttagaaattcattccatcatttgcaaacactaatggttcagacatactcagagatgtgaactatgcatcagagg |
12059533 |
T |
|
| Q |
160 |
gagctggaattcgtatggagaca |
182 |
Q |
| |
|
|||| |||||| |||| |||||| |
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| T |
12059534 |
gagcaggaatttgtatcgagaca |
12059556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 12064819 - 12064924
Alignment:
| Q |
75 |
cttcttggatttgagaatttcattccaccatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgcatctggcggagctggaattcgta |
174 |
Q |
| |
|
|||||||||||| |||| ||||||||| |||||||||||| | |||||||||||||||||||| |||||| |||||||| | ||||| |||||| ||| |
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| T |
12064819 |
cttcttggattttagaaattcattccatcatttgcaaacactaatggttcagacatactcaaagatgtgaaatatgcatccgagggagcgggaatttgta |
12064918 |
T |
|
| Q |
175 |
tggaga |
180 |
Q |
| |
|
| |||| |
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| T |
12064919 |
tcgaga |
12064924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 5558927 - 5558827
Alignment:
| Q |
72 |
caacttcttggatttgagaatttcattccaccatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgcatctggcggagctggaattc |
171 |
Q |
| |
|
||||| |||||||| |||| ||||| ||||| |||||||||| | ||||||||| ||||| |||||||| |||||||||||||| | ||||||||||| |
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|
| T |
5558927 |
caactacttggattcaagaaattcatcccaccctttgcaaacactattggttcagatatacttaaaggtgttaactatgcatctggtgcagctggaattc |
5558828 |
T |
|
| Q |
172 |
g |
172 |
Q |
| |
|
| |
|
|
| T |
5558827 |
g |
5558827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 12052030 - 12052137
Alignment:
| Q |
75 |
cttcttggatttgagaatttcattccaccatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgcatctggcggagctggaattcgta |
174 |
Q |
| |
|
|||||||||||| ||| ||||||||| |||||||||||| | ||||| ||| || |||||||||||||| ||||||| || ||||| |||||||||| |
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| T |
12052030 |
cttcttggattttagatattcattccatcatttgcaaacactaatggtttagatattctcaaaggtgtgaattatgcatatgagggagcaggaattcgta |
12052129 |
T |
|
| Q |
175 |
tggagaca |
182 |
Q |
| |
|
| |||||| |
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|
| T |
12052130 |
tcgagaca |
12052137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 5568588 - 5568505
Alignment:
| Q |
72 |
caacttcttggatttgagaatttcattccaccatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgcatct |
155 |
Q |
| |
|
||||| |||||||| |||||||||| |||||||||||||||| | ||| |||| |||||| |||||||| |||||||||||| |
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|
| T |
5568588 |
caactacttggattcaagaatttcatcccaccatttgcaaacaatattggctcaggcatacttaaaggtgttaactatgcatct |
5568505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 12054142 - 12054219
Alignment:
| Q |
74 |
acttcttggatttgagaatttcattccaccatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgc |
151 |
Q |
| |
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||||||||||||||||||||| ||| || ||||||||||| | ||||| ||||||||| |||||| ||||||||| |
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|
| T |
12054142 |
acttcttggatttgagaatttaatttcatcatttgcaaaccctaatggtttagacatacttaaaggtccgaactatgc |
12054219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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