View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13029_low_21 (Length: 219)
Name: NF13029_low_21
Description: NF13029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13029_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 6126204 - 6126023
Alignment:
| Q |
20 |
tacttcctggtaaacataccacaacactatcataattgtagctatgaatttcggaacaacgtttatctactagtacattgtacaatgcaacactctttat |
119 |
Q |
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| T |
6126204 |
tacttcctggtaaacataccacaacactatcataattgtagctatgaatttcggaacaacgtttatctactagtacattgtacaatgcaacactctttat |
6126105 |
T |
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| Q |
120 |
tactagtattgtgtcttccgtgatgcggttgagtgaaagttcatttgattccaacatttttccattcttgaatgaagtatat |
201 |
Q |
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| T |
6126104 |
tactagtattgtgtcttccgtgatgcggttgagtgaaagttcatttgattccaacatttttccattcttgaatgaaatatat |
6126023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 6172153 - 6172332
Alignment:
| Q |
22 |
cttcctggtaaacataccacaacactatcataattgtagctatgaatttcggaacaacgtttatctactagtacattgtacaatgcaacactctttatta |
121 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||| ||||||||||||||||| || | |
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| T |
6172153 |
cttcctggtaaatacaccacaacactatcataattgtagctatgagtttctgaacaacgtttatgtactagtacattatacaatgcaacactcttcataa |
6172252 |
T |
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| Q |
122 |
ctagtattgtgtcttccgtgatgcggttgagtgaaagttcatttgattccaacatttttccattcttgaatgaagtatat |
201 |
Q |
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| T |
6172253 |
ctagaattgtgtcttccgtgatgcaattgagtgacaggtcatttgattccaacatttttccattattgaatgaaatatat |
6172332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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