View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13029_low_22 (Length: 206)
Name: NF13029_low_22
Description: NF13029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13029_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 23096271 - 23096157
Alignment:
| Q |
72 |
gcagaatatttttcctggattgtggttaagagaggttaatgcagaaatgtatgaggttcaagatacaaatcagaatgggaaatctgggaagagaaaaggg |
171 |
Q |
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| T |
23096271 |
gcagaatatttttcctggattgtggttaagagaagttaatgaagaaatgtatgaggttcaagatacaaatcagaatgggaaatctgggaagaggaaaggg |
23096172 |
T |
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| Q |
172 |
ttaaggaattggttg |
186 |
Q |
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| T |
23096171 |
ttaaggaattggttg |
23096157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 23072125 - 23072041
Alignment:
| Q |
80 |
tttttcctggattgtggttaagagaggttaatgcagaaatgtatgaggttcaagatacaaatcagaatgggaaatctgggaagag |
164 |
Q |
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| T |
23072125 |
ttttccctggactgtggttaagagaggttactgctgaaatgtacgaggttcatgatacaaatcagaatgggagatttgggaagag |
23072041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 171
Target Start/End: Complemental strand, 23127960 - 23127861
Alignment:
| Q |
72 |
gcagaatatttttcctggattgtggttaagagaggttaatgcagaaatgtatgaggttcaagatacaaatcagaatgggaaatctgggaagagaaaaggg |
171 |
Q |
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| T |
23127960 |
gcagaatgtttttcctggattgtggctaagtgatgttaatgctgaaaagtacaaggttcatgatacaaatcagaatgagagatctgcgaagaggaaaggg |
23127861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 7652853 - 7652893
Alignment:
| Q |
9 |
gagatgaaacacaagcccctacttacgaaacgagatgaagg |
49 |
Q |
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| T |
7652853 |
gagatgaagcacaagccccttcttacgaaacgagatgaagg |
7652893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 6963677 - 6963585
Alignment:
| Q |
72 |
gcagaatatttttcctggattgtggttaagagaggttaatgcagaaatgtatgaggttcaagatacaaatcagaatgggaaatctgggaagag |
164 |
Q |
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||||||| |||| ||||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||| ||| ||| ||||| |||||| |
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| T |
6963677 |
gcagaatgttttccctggattgtggttaagggaggttaatgctgaaatgtatgaggttcttgatgcaaatcaaaataggagatctgcgaagag |
6963585 |
T |
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