View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13029_low_3 (Length: 724)
Name: NF13029_low_3
Description: NF13029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13029_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 58 - 605
Target Start/End: Complemental strand, 13117100 - 13116550
Alignment:
| Q |
58 |
tttgctcagcaaaattagttctcacattagagacaaaaaatataatacaatcatcatacaagagtcatattgctcaagttctttcaatagtatataacac |
157 |
Q |
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| T |
13117100 |
tttgctcagcaacattagttctcacattagagacaaaaaatataatacaattatcatacaagagtcatattgctcaagttcttacaatagtatataagac |
13117001 |
T |
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| Q |
158 |
gtattatatagtgcaatatgtgataataagaagaatcacttatacaacaaattaatcaaaattcattgtagaggaatcaaagccaccaaagatgatgctt |
257 |
Q |
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| T |
13117000 |
gtattatatagtgcaatatgtgataataggaagaaccacttatacaacaaattaatcaaaattcattgtagaggaatcaaagccaccaaagatgatgctt |
13116901 |
T |
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| Q |
258 |
ccgttgccatttccatgaacataaccggtgttgttaataagaccctccatgttttgggtgcccccgttggagaaagtgtcgggaggtggcttttggcgac |
357 |
Q |
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| T |
13116900 |
ccgttgccatttccatgaacataaccggtgttgttaataagaccctccatgttttgggtgcccccgttggagaaagtgtcgggaggtggcttttggcgac |
13116801 |
T |
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| Q |
358 |
gagcaacggcattggaaccattgcggttgcgtcgtcgtggttgtcgaggttgtggttcttccacatgatcctcatcaaggatgcgcagcaattgcatcaa |
457 |
Q |
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| T |
13116800 |
gagcaacggcactggaaccattgcggttgcgtcgtcgtggttgtcgaggttgtggttcttccacatgatcctcatcaaggaggttcagcaattgcatcaa |
13116701 |
T |
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| Q |
458 |
tgatgccattgttagcaagctagcttggaagagctaaagttttagatgcctt-gtaggagatgttgcacccatctatatataga--atatgtatatgact |
554 |
Q |
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| T |
13116700 |
tgatgccattgttaactagttagcttggaagggctcaagttttagatgccttggtaggagatgttgcacccatctatatatagaatatatgtatatgact |
13116601 |
T |
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| Q |
555 |
tgcttaaggaataatatgtaggaccctgttaacttgaagagtaagctaagt |
605 |
Q |
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| T |
13116600 |
tgcttaaggaataatatgtaggaccctgttaacttgaagagtaagctaagt |
13116550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 618 - 707
Target Start/End: Complemental strand, 13116478 - 13116389
Alignment:
| Q |
618 |
tgacataacataacatcagttagaggtttaattgattaaattcattattcacaaaataataaatgtcttatagagcaattatatttgttt |
707 |
Q |
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| T |
13116478 |
tgacataacataacatcagttagaggtttaattgattaaattcattattcacaaaataataaatgtcttatagagcaattatatttgttt |
13116389 |
T |
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