View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13029_low_4 (Length: 510)

Name: NF13029_low_4
Description: NF13029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13029_low_4
NF13029_low_4
[»] chr4 (55 HSPs)
chr4 (28-494)||(27571503-27571968)
chr4 (54-366)||(27411379-27411690)
chr4 (28-364)||(27418996-27419331)
chr4 (42-378)||(27414212-27414550)
chr4 (47-378)||(27567154-27567485)
chr4 (47-379)||(27421841-27422176)
chr4 (47-368)||(27424432-27424755)
chr4 (125-283)||(27556384-27556542)
chr4 (126-287)||(27478884-27479045)
chr4 (126-287)||(27485944-27486105)
chr4 (174-287)||(27506724-27506837)
chr4 (173-287)||(27412689-27412803)
chr4 (132-329)||(27513735-27513932)
chr4 (175-287)||(27444795-27444907)
chr4 (175-326)||(27431110-27431261)
chr4 (190-287)||(27563347-27563444)
chr4 (132-287)||(27486967-27487122)
chr4 (177-287)||(27585717-27585827)
chr4 (197-287)||(27595434-27595524)
chr4 (130-287)||(27559241-27559398)
chr4 (174-326)||(27425838-27425990)
chr4 (175-283)||(27557516-27557624)
chr4 (132-287)||(27526113-27526268)
chr4 (132-287)||(27479885-27480040)
chr4 (167-286)||(27501336-27501455)
chr4 (132-287)||(27505703-27505858)
chr4 (126-268)||(27527139-27527281)
chr4 (132-289)||(27498399-27498556)
chr4 (190-287)||(27503964-27504061)
chr4 (132-287)||(27476671-27476826)
chr4 (203-286)||(27554364-27554447)
chr4 (177-287)||(27415650-27415760)
chr4 (190-287)||(27468328-27468425)
chr4 (190-287)||(27475580-27475677)
chr4 (190-283)||(27524566-27524659)
chr4 (192-284)||(27490004-27490096)
chr4 (190-286)||(27514933-27515029)
chr4 (125-287)||(27446124-27446286)
chr4 (190-287)||(27420450-27420547)
chr4 (126-287)||(27497323-27497484)
chr4 (177-326)||(27565913-27566062)
chr4 (190-287)||(27570050-27570147)
chr4 (174-286)||(27502809-27502921)
chr4 (192-287)||(17970343-17970438)
chr4 (240-286)||(27507815-27507861)
chr4 (237-287)||(27600642-27600692)
chr4 (190-287)||(27423264-27423361)
chr4 (244-289)||(27473988-27474033)
chr4 (244-287)||(27460574-27460617)
chr4 (244-287)||(27466917-27466960)
chr4 (132-287)||(27469444-27469599)
chr4 (232-287)||(27495620-27495675)
chr4 (192-283)||(27508896-27508987)
chr4 (237-283)||(27577407-27577453)
chr4 (231-287)||(27502136-27502192)
[»] chr5 (3 HSPs)
chr5 (132-287)||(1756758-1756913)
chr5 (117-316)||(1755967-1756166)
chr5 (132-286)||(1754243-1754397)
[»] chr3 (16 HSPs)
chr3 (132-287)||(55084770-55084925)
chr3 (126-283)||(38032260-38032417)
chr3 (126-283)||(38035033-38035190)
chr3 (126-283)||(38038525-38038682)
chr3 (126-283)||(50913474-50913631)
chr3 (126-283)||(38027433-38027590)
chr3 (174-287)||(38043929-38044042)
chr3 (132-287)||(38024876-38025031)
chr3 (132-287)||(38031328-38031483)
chr3 (192-287)||(50910004-50910099)
chr3 (132-287)||(50911870-50912025)
chr3 (241-287)||(48840713-48840759)
chr3 (230-287)||(38028767-38028824)
chr3 (195-287)||(50904793-50904885)
chr3 (132-287)||(38036794-38036949)
chr3 (230-287)||(38040082-38040139)
[»] chr8 (3 HSPs)
chr8 (126-283)||(21608235-21608392)
chr8 (213-287)||(21634608-21634682)
chr8 (230-287)||(21607297-21607354)
[»] chr2 (1 HSPs)
chr2 (192-287)||(3073613-3073708)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 55)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 28 - 494
Target Start/End: Original strand, 27571503 - 27571968
Alignment:
Q  28 gtgaggaaccataaataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttga 127  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||    
T  27571503 gtgaggaaccataaatactaaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagagactgccaagggacttga 27571602  T
Q  128 agtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattacta 227  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||| ||||||| |||| ||| ||||  |||||||||||||||    
T  27571603 agtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattacta 27571702  T
Q  228 aatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaatt 327  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571703 aatcaatcagaagaagaatttggatatgatcatccaatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaatt 27571802  T
Q  328 gagctctagatcatgctaatggagatttagatagattagttgaagctaattactatagaaaccannnnnnnnnnctgttgaagannnnnnnattgttccg 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||       |||||||||    
T  27571803 gagctctagatcatgctaatggagatttagatagattagttgaagctaattactatagaaaccattttttttttctgttgaaga-ttttttattgttccg 27571901  T
Q  428 tccatgtattaatcaatcattcctacggaaatcaaaatgtttcctgaatgagaatgttaaattatta 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571902 tccatgtattaatcaatcattcctacggaaatcaaaatgtttcctgaatgagaatgttaaattatta 27571968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 54 - 366
Target Start/End: Complemental strand, 27411690 - 27411379
Alignment:
Q  54 atgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctcgcagtgt 153  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27411690 atgggtttccgcatagcaaagcttattagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctcgcagtct 27411591  T
Q  154 atgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggata 253  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  27411590 atgttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggata 27411491  T
Q  254 tgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagat 353  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| || || ||||| ||| | ||| || || |||| ||||||||||||    
T  27411490 tgatcatcctatgggtggtctcacaattccttgcagcgaggatgaattccaaaacctcacatctcgtttg-agtgaactgtaaatcaagctaatggagat 27411392  T
Q  354 ttagatagattag 366  Q
    | |||||||||||    
T  27411391 taagatagattag 27411379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 28 - 364
Target Start/End: Complemental strand, 27419331 - 27418996
Alignment:
Q  28 gtgaggaaccataaataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttga 127  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||    
T  27419331 gtgaggagccatacataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagagactgccaagggacttga 27419232  T
Q  128 agtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattacta 227  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||| ||||||| |||| ||| ||||  |||||||||||||||    
T  27419231 agtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattacta 27419132  T
Q  228 aatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaatt 327  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||  ||| || | || ||||||||||| || |    
T  27419131 aatcaatcagaagaagaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcgctt-aagt 27419033  T
Q  328 gagctctagatcatgctaatggagatttagatagatt 364  Q
    ||  | || |||||||||||||||||| |||||||||    
T  27419032 gatttgtaaatcatgctaatggagattaagatagatt 27418996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 42 - 378
Target Start/End: Complemental strand, 27414550 - 27414212
Alignment:
Q  42 ataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggct 141  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||| ||||| ||||||| ||||||| ||||||||||    
T  27414550 ataaaaaaaacaatgggtttccgcatagcaaagcttatcagaaagccatcattttcgtcaacacaagcatctagcaagggatttgaagtgccaaaaggct 27414451  T
Q  142 atctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaaga 241  Q
    |||| ||||| || ||||| |||| |||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||||||||| |||||||    
T  27414450 atcttgcagtctacgttggagataaaatgagacggtttgtgattcctgtatcatacttgaaccaaccctcatttcaagaattactaaatcaatcagaaga 27414351  T
Q  242 agaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctag--atc 339  Q
    ||||||||||||||||||||| ||||||||||| |||||||| ||| | || |||||||||| ||| || ||||||||| ||||||||||| |||  ||     
T  27414350 agaatttggatatgatcatccaatgggtggtcttacaattccgtgcagtgaagatgaattccaaaacctcacttctcgcatgaattgagctgtagatatt 27414251  T
Q  340 atgctaatggagatttagatagattagttgaagctaatt 378  Q
    ||||||| |||| |||||||||||||||||| |||||||    
T  27414250 atgctaacggagctttagatagattagttgaggctaatt 27414212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 47 - 378
Target Start/End: Original strand, 27567154 - 27567485
Alignment:
Q  47 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctc 146  Q
    |||||||||||||||||| ||||| |   |||||| || | |||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||    
T  27567154 aaaaacaatgggtttccgtatagccagtattatcaaaagggcatcattttccaaaactcaaggatctagcaagggatttgaagtcccaaaaggctatctc 27567253  T
Q  147 gcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 246  Q
    ||||| |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  27567254 gcagtctatgttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaat 27567353  T
Q  247 ttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaa 346  Q
    |||| ||||||||||| |||||||||||||||||||||||| |||| ||||  ||| || | || ||||||| |||||||||||||  || |||||| ||    
T  27567354 ttggttatgatcatccaatgggtggtctcacaattccttgcagcgaagatgctttcttagaactcacttctcacttgaattgagctgaaggtcatgcaaa 27567453  T
Q  347 tggagatttagatagattagttgaagctaatt 378  Q
    |||||||||||||||| ||||||| |||||||    
T  27567454 tggagatttagatagaatagttgaggctaatt 27567485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 47 - 379
Target Start/End: Complemental strand, 27422176 - 27421841
Alignment:
Q  47 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctc 146  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||| |||| ||||||||||||| |||||||||||||||||||||||    
T  27422176 aaaaacaatgggtttccgcatagcaaaacttatcagaatgccatcattttcctcaacgcaagcatctaccaagggatttgaagtcccaaaaggctatctc 27422077  T
Q  147 gcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 246  Q
    ||||| |||||||| |||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27422076 gcagtctatgttggagatagaatgaaacggttcgtgattccagtatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 27421977  T
Q  247 tt----ggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatg 342  Q
    ||    ||||| |||||||| | |||||||||||||||||||||| | || |||   ||| || | || |||||||| |||||||||||  || ||||||    
T  27421976 ttggatggatacgatcatccaacgggtggtctcacaattccttgcagtgaagattctttcttacaactcacttctcgattgaattgagccgtaaatcatg 27421877  T
Q  343 ctaatggagatttagatagattagttgaagctaatta 379  Q
    |||||  ||| ||||||||||||||| | ||||||||    
T  27421876 ctaat-cagacttagatagattagttaaggctaatta 27421841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 47 - 368
Target Start/End: Complemental strand, 27424755 - 27424432
Alignment:
Q  47 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctc 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| |||||  || ||| | |||||||||||||||||||||    
T  27424755 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttcgtcaacacaagcatctagtaaaggattcgaagtcccaaaaggctatctc 27424656  T
Q  147 gcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 246  Q
    ||||| |||||||| |||  |||||| ||||||||||||||| ||||||||||||||||||| | |||||||||||| ||||||||| | ||||||||||    
T  27424655 gcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaagaat 27424556  T
Q  247 ttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctag--atcatgct 344  Q
     ||||||||||||||| ||||||||||| || ||||| ||| ||||||||||||||| ||| || ||||||||| ||||||||||| |||  ||||||||    
T  27424555 atggatatgatcatccaatgggtggtcttaccattccgtgcagcgaggatgaattccgaaacctcacttctcgcatgaattgagctgtagatatcatgct 27424456  T
Q  345 aatggagatttagatagattagtt 368  Q
    ||| |||||| | |||||||||||    
T  27424455 aatagagattaatatagattagtt 27424432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 125 - 283
Target Start/End: Complemental strand, 27556542 - 27556384
Alignment:
Q  125 tgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaatta 224  Q
    ||||||||||||||||||||||||||| |||||||| || | |||||  || |||||||||||  | ||||  ||||||||||| | |||||||||||||    
T  27556542 tgaagtcccaaaaggctatctcgcagtttatgttggagaaaaaatgaagcgatttgtgattcccatttcattattgaaccaaccttcatttcaagaatta 27556443  T
Q  225 ctaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 283  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27556442 ctacatcaagcagaagaagaatttggatatgatcattctatgggtggtctcacaattcc 27556384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 126 - 287
Target Start/End: Complemental strand, 27479045 - 27478884
Alignment:
Q  126 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 225  Q
    ||||| ||||| |||||| | |||||||||||||| || | |  ||  ||||||||  | ||| |||||||||||||||||||||| ||||||||||| |    
T  27479045 gaagttccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgc 27478946  T
Q  226 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    || ||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  27478945 tacatcaagcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27478884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 126 - 287
Target Start/End: Complemental strand, 27486105 - 27485944
Alignment:
Q  126 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 225  Q
    ||||| ||||| |||||| | |||||||||||||| || | |  ||  ||||||||  | ||| |||||||||||||||||||||| ||||||||||| |    
T  27486105 gaagttccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgc 27486006  T
Q  226 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    || ||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  27486005 tacatcaagcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27485944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 174 - 287
Target Start/End: Original strand, 27506724 - 27506837
Alignment:
Q  174 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 273  Q
    ||||||||||| ||| |||||||||| ||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||| |    
T  27506724 cggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggac 27506823  T
Q  274 tcacaattccttgc 287  Q
    |||| |||||||||    
T  27506824 tcaccattccttgc 27506837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 173 - 287
Target Start/End: Original strand, 27412689 - 27412803
Alignment:
Q  173 acggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggt 272  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| ||| | | |||||| |||||||| ||||||||||||||||| ||||||||     
T  27412689 acggtttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggc 27412788  T
Q  273 ctcacaattccttgc 287  Q
    ||||| |||||||||    
T  27412789 ctcaccattccttgc 27412803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 132 - 329
Target Start/End: Complemental strand, 27513932 - 27513735
Alignment:
Q  132 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 231  Q
    |||||||| ||||| ||||||||||| || || | |||||  ||||||||||| ||| ||||||||||||||||| | |  || ||||||||  | || |    
T  27513932 ccaaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaacc 27513833  T
Q  232 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattga 329  Q
    |||| |||||| ||| || |||||||||||| |||||||||||||| ||||||||| | || || | |||| || || | ||||||||||||||||||    
T  27513832 aagctgaagaacaatatgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagtattcttagatatcacttctcgcttgaattga 27513735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 27444907 - 27444795
Alignment:
Q  175 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtct 274  Q
    |||||||||| ||| |||||||||||| |||| ||| ||||||||||||| | |||||||| || ||| |||| |||||||| ||||| |||||||||||    
T  27444907 ggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtct 27444808  T
Q  275 cacaattccttgc 287  Q
    |||||||||||||    
T  27444807 cacaattccttgc 27444795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 175 - 326
Target Start/End: Complemental strand, 27431261 - 27431110
Alignment:
Q  175 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtct 274  Q
    |||||||||| ||| ||||||||||||||||||| | ||||||||||||  | |||||||| || ||| ||||||||||||| ||||| |  ||||||||    
T  27431261 ggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaaccggtggtct 27431162  T
Q  275 cacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaat 326  Q
    ||||||||||||| | || || |  ||| ||||| |||||||||| ||||||    
T  27431161 cacaattccttgcagagaagacgttttcttaaatattacttctcgtttgaat 27431110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 27563444 - 27563347
Alignment:
Q  190 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    ||||||||||||||||| |||| |||||||| || || | |||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||    
T  27563444 tatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtggcctcacaattccttgc 27563347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 132 - 287
Target Start/End: Original strand, 27486967 - 27487122
Alignment:
Q  132 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 231  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||| || ||||||||||| ||||||||||  |||||||||||  | || |    
T  27486967 ccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaacc 27487066  T
Q  232 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||| |||||| |||||| |||||||||||| ||||||||||| || |||||||||    
T  27487067 aagctgaagaacaatttgaatatgatcatccaatgggtggtcttactattccttgc 27487122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 27585717 - 27585827
Alignment:
Q  177 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctca 276  Q
    |||||||| ||  |||||||||||||||||||||| |||||||| ||  | | |||||| |||||||| ||||||||||||||||| ||||| |||||||    
T  27585717 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctca 27585816  T
Q  277 caattccttgc 287  Q
    | |||||||||    
T  27585817 ccattccttgc 27585827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 197 - 287
Target Start/End: Original strand, 27595434 - 27595524
Alignment:
Q  197 cttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||||||| ||||||||||||||||||||||| |||||||||| |||| |||||||   ||||||| ||||||||||| ||||||||||||    
T  27595434 cttgaaccgaccattatttcaagaattactaagtcaagcagaaaaagagtttggattcaatcatcccatgggtggtcttacaattccttgc 27595524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 130 - 287
Target Start/End: Complemental strand, 27559398 - 27559241
Alignment:
Q  130 tcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaa 229  Q
    |||||||||||||||||||||| |||||||| || | |||||   | ||| |||||||  | ||||  ||||| ||| | | ||||||| | ||| |||     
T  27559398 tcccaaaaggctatctcgcagtttatgttggagacaaaatgaagagatttctgattcctatttcattattgaatcaatcttcatttcaatagttattaag 27559299  T
Q  230 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
     ||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  27559298 ccaatcagaagaagagtttggatatgatcatccaatgggtggtctcacaattccttgc 27559241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 174 - 326
Target Start/End: Original strand, 27425838 - 27425990
Alignment:
Q  174 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 273  Q
    |||| |||||| ||| ||||||||||||||||||||| ||||||||| ||| | | ||||   || ||||| ||||||||||||||||| |||||||| |    
T  27425838 cggtatgtgatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcc 27425937  T
Q  274 tcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaat 326  Q
    |||| |||||||||  |||||||| ||| | | || | || ||||||||||||    
T  27425938 tcaccattccttgcaccgaggatgtatttcaacatatgacatctcgcttgaat 27425990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 283
Target Start/End: Original strand, 27557516 - 27557624
Alignment:
Q  175 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtct 274  Q
    |||||||||| ||| | |||||||| |||||||||| |||||||||||| || |||||||| || ||| |||||| ||||| |||||| |||||||||||    
T  27557516 ggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttgaatatgttcatccaatgggtggtct 27557615  T
Q  275 cacaattcc 283  Q
    ||| |||||    
T  27557616 cactattcc 27557624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 287
Target Start/End: Complemental strand, 27526268 - 27526113
Alignment:
Q  132 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 231  Q
    ||||| || ||||| |||||||||||||| || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| ||||||||  | |  |    
T  27526268 ccaaagggatatctagcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagcc 27526169  T
Q  232 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||| || ||| |||||| |||||||||||| | |||||||||||| |||||||||    
T  27526168 aagctgaggaacaatttgaatatgatcatccaacgggtggtctcactattccttgc 27526113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 132 - 287
Target Start/End: Original strand, 27479885 - 27480040
Alignment:
Q  132 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 231  Q
    |||||||||||||| ||||| || || || || | |||||  || |||||||||||  ||||||||||||||||| ||| ||| ||| | ||  | || |    
T  27479885 ccaaaaggctatctagcagtatacgtaggagagaaaatgaagcgttttgtgattcctgtatcatacttgaaccaaacatcattccaaaagttgttgaacc 27479984  T
Q  232 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||| || ||| |||||| |||||||||||| |||||||||||||| |||||||||    
T  27479985 aagctgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgc 27480040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 27501336 - 27501455
Alignment:
Q  167 aatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatg 266  Q
    ||||| |||||||||||| ||| |||||||||| ||||||||||| |||||||| ||  | || ||||| || ||| |||||| ||| |||||||| | |    
T  27501336 aatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaatttgaatacgatcatccaacg 27501435  T
Q  267 ggtggtctcacaattccttg 286  Q
    ||||||||||| ||||||||    
T  27501436 ggtggtctcactattccttg 27501455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 132 - 287
Target Start/End: Complemental strand, 27505858 - 27505703
Alignment:
Q  132 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 231  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| ||||||||  | || |    
T  27505858 ccaaaggggtatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgaacc 27505759  T
Q  232 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||| || ||| |||||| |||||| ||||| |||||||||||||| |||||||||    
T  27505758 aagctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgc 27505703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 268
Target Start/End: Original strand, 27527139 - 27527281
Alignment:
Q  126 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 225  Q
    ||||| ||||| |||||||| || ||||||||||| |||| |  || |||||||||||| ||| ||||| |||| ||||||||||  |||| ||| || |    
T  27527139 gaagtaccaaagggctatcttgcggtgtatgttggagataaacagaaacggtttgtgatcccaatatcacacttaaaccaaccatcgtttctagagttgc 27527238  T
Q  226 taaatcaagcagaagaagaatttggatatgatcatcctatggg 268  Q
    | | |||||| || ||||| ||||||||||||||||| |||||    
T  27527239 tgagtcaagctgaggaagagtttggatatgatcatcccatggg 27527281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 132 - 289
Target Start/End: Original strand, 27498399 - 27498556
Alignment:
Q  132 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 231  Q
    ||||| || ||||| ||||| |||||||| ||   ||||| ||| |||||||| ||  |||||||||||||||||||||  || ||||| ||  | || |    
T  27498399 ccaaagggatatctagcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaacc 27498498  T
Q  232 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcgg 289  Q
    |||| || ||| |||| | |||||||||||| |||||||||||||| |||||||||||    
T  27498499 aagccgaggaacaattcgaatatgatcatccaatgggtggtctcactattccttgcgg 27498556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 27503964 - 27504061
Alignment:
Q  190 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    ||||||||||||||||||| | ||||||||| ||  | | |||||| || ||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  27503964 tatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgc 27504061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 132 - 287
Target Start/End: Original strand, 27476671 - 27476826
Alignment:
Q  132 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 231  Q
    ||||| || ||||| |||||||||||||| || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| |||||| | || |  |    
T  27476671 ccaaagggatatctagcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagcc 27476770  T
Q  232 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    ||   || ||| |||||| |||||||||||| ||||||||||| || |||||||||    
T  27476771 aaagtgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgc 27476826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 27554364 - 27554447
Alignment:
Q  203 ccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttg 286  Q
    ||||||||  ||||||||||| || |||||||| || ||| ||||||||||||||||||| | |||| ||||||||||||||||    
T  27554364 ccaaccatcgtttcaagaattgctgaatcaagctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttg 27554447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 27415650 - 27415760
Alignment:
Q  177 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctca 276  Q
    |||||||| ||  |||||||||||||||||||||  |||||||| ||  | | |||||| || ||||| ||||||||||||||| | |||||||| ||||    
T  27415650 tttgtgatccccatatcatacttgaaccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggcctca 27415749  T
Q  277 caattccttgc 287  Q
    | |||||||||    
T  27415750 ccattccttgc 27415760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 27468425 - 27468328
Alignment:
Q  190 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||||||||| |||||||| | ||||||||| ||  | | |||| | || ||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  27468425 tatcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27468328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 27475677 - 27475580
Alignment:
Q  190 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    ||||||||||||| ||||| | ||||||||| ||  | | |||||| || ||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  27475677 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgc 27475580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 283
Target Start/End: Original strand, 27524566 - 27524659
Alignment:
Q  190 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 283  Q
    ||||||| ||||||||||| | ||||||||| ||  | |||||||| || ||||| ||||||||||||||||| |||||||| ||||| |||||    
T  27524566 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattcc 27524659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 27490004 - 27490096
Alignment:
Q  192 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcct 284  Q
    |||||||| ||| |||||| ||||||||| ||  | |||||||| || ||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  27490004 tcatacttaaacaaaccatcatttcaagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattcct 27490096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 286
Target Start/End: Original strand, 27514933 - 27515029
Alignment:
Q  190 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttg 286  Q
    ||||||||||||| ||||| | ||||||||| ||  | | |||| | || ||||||||||||||||||||||| |||||||| ||||| ||||||||    
T  27514933 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttg 27515029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 125 - 287
Target Start/End: Original strand, 27446124 - 27446286
Alignment:
Q  125 tgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaatta 224  Q
    ||||||||||||||||||||| || || |||||||| || | |||||  || ||||||||||||   ||||  ||||| ||||| | ||||||||| |      
T  27446124 tgaagtcccaaaaggctatcttgcggtttatgttggagaaaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcatttcaagagtcg 27446223  T
Q  225 ctaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
     |||  ||| |||||||||| |||| |||||||||||  |||| ||||||| | |||||||||    
T  27446224 ttaagccaatcagaagaagagtttgaatatgatcatcgaatggatggtctctcgattccttgc 27446286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 27420450 - 27420547
Alignment:
Q  190 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||||||||||| |||||| | ||||||||  || || | |||||  || ||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  27420450 tatcatacttgagccaaccttcatttcaaggcttgctgagtcaagttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgc 27420547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 287
Target Start/End: Complemental strand, 27497484 - 27497323
Alignment:
Q  126 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 225  Q
    ||||| ||||| |||||| | |||||||||||||| |||| |   |  ||||||||||| ||  | |||||||| ||||||||||| |||||| | ||      
T  27497484 gaagttccaaagggctatgttgcagtgtatgttggagataaacaaaagcggtttgtgatccctatctcatacttaaaccaaccattgtttcaatatttgt 27497385  T
Q  226 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    | | |||||| || ||||| ||||||||||||||||| |  ||||| ||||| |||||||||    
T  27497384 tgagtcaagctgaggaagagtttggatatgatcatcccacaggtggcctcaccattccttgc 27497323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 326
Target Start/End: Complemental strand, 27566062 - 27565913
Alignment:
Q  177 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctca 276  Q
    |||||||| ||  |||||||| ||||||||||||| |||||||| || || |  ||||  || |||||   ||||||||||||||| |||||||| ||||    
T  27566062 tttgtgatccccatatcatacctgaaccaaccattgtttcaagacttgctgatacaagttgaggaagagcatggatatgatcatccaatgggtggcctca 27565963  T
Q  277 caattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaat 326  Q
    | |||||||| ||||| ||||  |||| | || | |||||| ||||||||    
T  27565962 ccattccttgtggcgaagatgtcttccaacatataacttcttgcttgaat 27565913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 27570147 - 27570050
Alignment:
Q  190 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||||||||| | |||||| | ||||||||| || || | |||||| || ||||| || |||||||||||||| |||||||| ||||| |||||||||    
T  27570147 tatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggcctcaccattccttgc 27570050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 286
Target Start/End: Complemental strand, 27502921 - 27502809
Alignment:
Q  174 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 273  Q
    ||||||||||||||| | ||||| ||||| ||| | | ||||||||| || || |  ||||| |  ||||||||||||||||| ||||| ||||||||||    
T  27502921 cggtttgtgattccaatgtcatatttgaatcaaacttcatttcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaatgggtggtc 27502822  T
Q  274 tcacaattccttg 286  Q
    | || ||||||||    
T  27502821 ttactattccttg 27502809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 287
Target Start/End: Original strand, 17970343 - 17970438
Alignment:
Q  192 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    ||||||||||||||| | | ||||||| | || || | ||  ||||| |||||||| ||||| |||||||| |||||||| |||||||||||||||    
T  17970343 tcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgc 17970438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 27507861 - 27507815
Alignment:
Q  240 gaagaatttggatatgatcatcctatgggtggtctcacaattccttg 286  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  27507861 gaagaatttggatatgaccatccaatgggtggtcttacaattccttg 27507815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 27600642 - 27600692
Alignment:
Q  237 gaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||||||||||||| ||  ||||||| ||||||||||||||||||||||||    
T  27600642 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgc 27600692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 27423264 - 27423361
Alignment:
Q  190 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    ||||||||||||||||||| | ||||||||||||  | | |||||| || ||||| ||||| ||  ||||||| |||||||| |||||  ||||||||    
T  27423264 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgc 27423361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 27473988 - 27474033
Alignment:
Q  244 aatttggatatgatcatcctatgggtggtctcacaattccttgcgg 289  Q
    |||||| |||||||||||| |||||||||||||| |||||||||||    
T  27473988 aatttgaatatgatcatccaatgggtggtctcaccattccttgcgg 27474033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 287
Target Start/End: Original strand, 27460574 - 27460617
Alignment:
Q  244 aatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||||| |||||||||||| |||||||||||||| |||||||||    
T  27460574 aatttgaatatgatcatccaatgggtggtctcaccattccttgc 27460617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 287
Target Start/End: Original strand, 27466917 - 27466960
Alignment:
Q  244 aatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||||| |||||||||||| |||||||||||||| |||||||||    
T  27466917 aatttgaatatgatcatccaatgggtggtctcactattccttgc 27466960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 287
Target Start/End: Original strand, 27469444 - 27469599
Alignment:
Q  132 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 231  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||| ||  ||||||| ||||| ||| ||| ||| |||||| |  | |  |    
T  27469444 ccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctatatcatatttgaagcaaacatcattacaagaactgttgagcc 27469543  T
Q  232 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||| |||||| |||||| |||||| ||||| ||||||||||| || |||||||||    
T  27469544 aagctgaagaacaatttgaatatgaacatccaatgggtggtctaactattccttgc 27469599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 27495620 - 27495675
Alignment:
Q  232 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||| |||||||| ||||||| | ||||||| |||||||||||||| |||||||||    
T  27495620 aagctgaagaagagtttggatttaatcatccaatgggtggtctcaccattccttgc 27495675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 283
Target Start/End: Original strand, 27508896 - 27508987
Alignment:
Q  192 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 283  Q
    ||||| ||||||||||| | ||||||||| ||  | ||||| || || ||||| ||||||||||||||||| | |||||| ||||| |||||    
T  27508896 tcatatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggcctcaccattcc 27508987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 27577407 - 27577453
Alignment:
Q  237 gaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 283  Q
    ||||||||||||||||   |||| |||||||||||||||||||||||    
T  27577407 gaagaagaatttggattcaatcaccctatgggtggtctcacaattcc 27577453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 27502192 - 27502136
Alignment:
Q  231 caagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    ||||| || ||| |||||| |||||||||||| ||||||||||| || |||||||||    
T  27502192 caagctgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgc 27502136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 132 - 287
Target Start/End: Complemental strand, 1756913 - 1756758
Alignment:
Q  132 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 231  Q
    ||||| |||||||| |||||| ||||||| || | |  ||  ||||||||||| ||| |||||||||||||||||||||  |||||| | ||  | | ||    
T  1756913 ccaaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtc 1756814  T
Q  232 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||| ||||||||||||||||||||||| || |||||||| ||||| |||||||||    
T  1756813 aagctgaagaagaatttggatatgatcaccccatgggtggcctcaccattccttgc 1756758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 117 - 316
Target Start/End: Complemental strand, 1756166 - 1755967
Alignment:
Q  117 aagggacttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttc 216  Q
    |||||| ||||||||   |||||||| || ||||| |||||||  ||| ||||||  | | | |||||| || ||||||||||||| ||||| | |||||    
T  1756166 aagggatttgaagtctagaaaggctaccttgcagtctatgttgaagatcgaatgaagcagatagtgatttcaatatcatacttgaatcaaccttaatttc 1756067  T
Q  217 aagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttc 316  Q
    |||||||||||   |||||||||||  ||||  ||||||||||||| |  | ||||||||||||||| |||   ||||||||| || ||||  |||||||    
T  1756066 aagaattactatgccaagcagaagagcaattcagatatgatcatccaactgttggtctcacaattccatgcaaggaggatgaaatcttaaactttacttc 1755967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 286
Target Start/End: Complemental strand, 1754397 - 1754243
Alignment:
Q  132 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 231  Q
    |||||||| ||||| || || |||||||| ||   |||||  ||||||||||| ||  ||||||||||||||||| | | ||||||| |||| |||||      
T  1754397 ccaaaaggatatctagctgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 1754298  T
Q  232 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttg 286  Q
    || | || ||| | |||| |||||||||||| |||||||||||||| ||||||||    
T  1754297 aatctgaggaacagtttgaatatgatcatccgatgggtggtctcactattccttg 1754243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 287
Target Start/End: Original strand, 55084770 - 55084925
Alignment:
Q  132 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 231  Q
    |||||||| | ||| |||||||||||||| || | |||||  ||||||||||| ||  | || |||||||||||||||| ||||||||| ||  | | ||    
T  55084770 ccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtc 55084869  T
Q  232 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
      || || |||||||||||||| |||||||| |||||||| |||||||||||||||    
T  55084870 gggcggaggaagaatttggatacgatcatccaatgggtggcctcacaattccttgc 55084925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 283
Target Start/End: Original strand, 38032260 - 38032417
Alignment:
Q  126 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 225  Q
    ||||| |||||||||||||| |||||||||||||| || | ||||||| ||||| |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38032260 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcattcttgaatgagcctttatttcaagaattgc 38032359  T
Q  226 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 283  Q
    | |  ||| | ||||| ||||| || |||  |||||| ||||| ||||| ||||||||    
T  38032360 ttagccaatctgaagaggaattcggttattgtcatccaatgggcggtcttacaattcc 38032417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 283
Target Start/End: Original strand, 38035033 - 38035190
Alignment:
Q  126 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 225  Q
    ||||||||||||||| |||| || ||||||||||| || | |||| || ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38035033 gaagtcccaaaaggccatcttgcggtgtatgttggagagaaaatgcgaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 38035132  T
Q  226 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 283  Q
    | |  ||||| ||||| ||||| || |||  |||||| ||||||||||||||||||||    
T  38035133 ttagccaagctgaagaggaattcggttattgtcatccaatgggtggtctcacaattcc 38035190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 283
Target Start/End: Original strand, 38038525 - 38038682
Alignment:
Q  126 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 225  Q
    ||||||||||||||| |||| |||||||||||||| || | ||||||| ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38038525 gaagtcccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 38038624  T
Q  226 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 283  Q
    | |  ||||| ||||| ||||| || |||  |||||| ||||| ||||| ||||||||    
T  38038625 ttagccaagctgaagaggaattcggttattgtcatccaatgggaggtcttacaattcc 38038682  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 283
Target Start/End: Original strand, 50913474 - 50913631
Alignment:
Q  126 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 225  Q
    |||||||||||||||||||| |||||||||||||| || | |||||   ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  50913474 gaagtcccaaaaggctatcttgcagtgtatgttggagagaaaatgaagaggttcttgattccaatatcattcttgaatgagcctttatttcaagaattgc 50913573  T
Q  226 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 283  Q
    | |  ||||| ||||| |||||||| ||   |||||| ||||||||||| ||||||||    
T  50913574 ttagccaagctgaagaggaatttggctactgtcatccaatgggtggtcttacaattcc 50913631  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 126 - 283
Target Start/End: Original strand, 38027433 - 38027590
Alignment:
Q  126 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 225  Q
    ||||| ||||||||| |||| |||||||||||||| || | ||||||| ||||| |||||||  |||||| ||||||  | || |||||||||||||| |    
T  38027433 gaagttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattcccgtatcattcttgaatgagcctttatttcaagaattgc 38027532  T
Q  226 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 283  Q
    | |  ||| | ||||| ||||| || |||  |||||| ||||||||||| ||||||||    
T  38027533 ttagccaatctgaagaggaattcggttattgtcatccaatgggtggtcttacaattcc 38027590  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 174 - 287
Target Start/End: Original strand, 38043929 - 38044042
Alignment:
Q  174 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 273  Q
    ||||||||||| ||  | ||||||||||| ||| | |  |||||||| || || | ||||||||| ||||||||||||||||||||||| ||||| || |    
T  38043929 cggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatgggcggcc 38044028  T
Q  274 tcacaattccttgc 287  Q
    ||||||||||||||    
T  38044029 tcacaattccttgc 38044042  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 132 - 287
Target Start/End: Complemental strand, 38025031 - 38024876
Alignment:
Q  132 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 231  Q
    ||||| |||||||| ||||| |||||||| ||   |||||  |||||||| || ||  | ||||||||||||||| | |  |||||| | ||| | | ||    
T  38025031 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtc 38024932  T
Q  232 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    ||||||| |||||||||||||||||||| || |||||||| ||||| |||||||||    
T  38024931 aagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgc 38024876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 132 - 287
Target Start/End: Complemental strand, 38031483 - 38031328
Alignment:
Q  132 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 231  Q
    ||||| |||||||| ||||| |||||||| ||   |||||  |||||||| || ||  | ||||||||||||||| | |  |||||| | ||| | | ||    
T  38031483 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtc 38031384  T
Q  232 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    ||||||| |||||||||||||||||||| || |||||||| ||||| |||||||||    
T  38031383 aagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgc 38031328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 192 - 287
Target Start/End: Original strand, 50910004 - 50910099
Alignment:
Q  192 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    ||||||||||||||| | | ||||||| | ||  | |||||||  || ||||||||||||||||||||||| |||||||| |||||||||||||||    
T  50910004 tcatacttgaaccaagcttcatttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggcctcacaattccttgc 50910099  T

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Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 132 - 287
Target Start/End: Complemental strand, 50912025 - 50911870
Alignment:
Q  132 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 231  Q
    ||||| |||||||| || || |||||||| || |  |||| |||||||||||| ||    ||||||||||||||| | | ||||||| | ||  | | ||    
T  50912025 ccaaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaaaacttgttgagtc 50911926  T
Q  232 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    ||||||| |||||||||||||||||||| || |||||||| || ||||||||||||    
T  50911925 aagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgc 50911870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 241 - 287
Target Start/End: Complemental strand, 48840759 - 48840713
Alignment:
Q  241 aagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  48840759 aagaatttggatatgatcatccaatgggtggcctcacaattccttgc 48840713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 38028824 - 38028767
Alignment:
Q  230 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||||| || ||||||||||||||||| ||||| ||||| || |||||||||||||||    
T  38028824 tcaagccgaggaagaatttggatatgaccatccaatgggcggcctcacaattccttgc 38028767  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 50904885 - 50904793
Alignment:
Q  195 tacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||||||||||| | | ||||||||| ||  | | || |||||| || ||||| |||||||||||||| |||||||| ||||| |||||||||    
T  50904885 tacttgaaccaaacttcatttcaagacttgttgagtcgagcagaggatgaattcggatatgatcatccaatgggtggcctcaccattccttgc 50904793  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 287
Target Start/End: Complemental strand, 38036949 - 38036794
Alignment:
Q  132 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 231  Q
    ||||| |||||||| |||||||| ||||| ||   ||||| |||||||||  | ||  |  |||||||||||||| | | ||||||| | ||  | | ||    
T  38036949 ccaaagggctatcttgcagtgtacgttggagagcaaatgaaacggtttgttgtccccatgccatacttgaaccaagcttcatttcaaaatttgttgagtc 38036850  T
Q  232 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||| || |||||||| |||||||| ||||| ||||| || |||||||||||||||    
T  38036849 aagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgc 38036794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 38040139 - 38040082
Alignment:
Q  230 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||||| || |||||||| |||||||| ||||| ||||| || |||||||||||||||    
T  38040139 tcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgc 38040082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 283
Target Start/End: Original strand, 21608235 - 21608392
Alignment:
Q  126 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 225  Q
    ||||| |||||||||||||| |||||||||||||| || | ||||||| ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  21608235 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 21608334  T
Q  226 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 283  Q
    | |  ||||| ||||| ||||| || |||  |||||| ||||| ||||| ||||||||    
T  21608335 ttagccaagctgaagaggaattcggttattgtcatccaatgggaggtcttacaattcc 21608392  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 287
Target Start/End: Original strand, 21634608 - 21634682
Alignment:
Q  213 tttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    |||||||| || || | ||||||||| ||||||||||||||||||||||  ||||| ||  ||||||||||||||    
T  21634608 tttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgc 21634682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 21607354 - 21607297
Alignment:
Q  230 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    ||||||||| |||||||||||||||||||| || |||||||| |||||  ||||||||    
T  21607354 tcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacggttccttgc 21607297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 287
Target Start/End: Original strand, 3073613 - 3073708
Alignment:
Q  192 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 287  Q
    ||||||||||||||| | | ||||||| | || || | ||  ||||| |||||||| ||||| |||||||| |||||||| |||||||||||||||    
T  3073613 tcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgc 3073708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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