View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13029_low_5 (Length: 490)

Name: NF13029_low_5
Description: NF13029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13029_low_5
NF13029_low_5
[»] chr2 (3 HSPs)
chr2 (7-240)||(26661413-26661646)
chr2 (339-472)||(26661745-26661878)
chr2 (102-232)||(6049912-6050043)
[»] chr6 (3 HSPs)
chr6 (7-240)||(21481331-21481564)
chr6 (340-472)||(21481663-21481797)
chr6 (104-240)||(19701161-19701298)
[»] chr7 (2 HSPs)
chr7 (28-226)||(13331531-13331727)
chr7 (28-226)||(13342446-13342642)
[»] chr5 (1 HSPs)
chr5 (28-226)||(5672002-5672198)
[»] chr8 (2 HSPs)
chr8 (28-240)||(32717808-32718020)
chr8 (28-240)||(10637574-10637786)
[»] chr1 (2 HSPs)
chr1 (28-240)||(22893729-22893941)
chr1 (102-232)||(44306129-44306259)
[»] chr3 (1 HSPs)
chr3 (45-226)||(15761973-15762154)
[»] scaffold0586 (1 HSPs)
scaffold0586 (104-240)||(9594-9731)
[»] chr4 (1 HSPs)
chr4 (119-232)||(13893697-13893810)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 26661413 - 26661646
Alignment:
Q  7 tccaagaatatacctcttctacccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaacc 106  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661413 tccaacaaaatacctcttctacccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaacc 26661512  T
Q  107 catgatctttgtgtgtgcatcaactgcttgtcaattaggtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattact 206  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  26661513 catgatctttgtgtgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattact 26661612  T
Q  207 caacatagatttggtgattgatatcaattctctg 240  Q
    ||||||||||||||||||||||||||||||||||    
T  26661613 caacatagatttggtgattgatatcaattctctg 26661646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 339 - 472
Target Start/End: Original strand, 26661745 - 26661878
Alignment:
Q  339 cccactgtttggcaattcttgttttttcccaatcatgaatcaatgcnnnnnnnggttagagacaacttgtttttattaacccaccttcttctaacttttc 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||||     
T  26661745 cccactgtttggcaattcttgttttttcccaatcatgaatcaatgaaaaaaaaggttagagacaacttgtttttattaaaccaccttcttctaacttttt 26661844  T
Q  439 ccaaaatatgttaataaccatgacgctgaattct 472  Q
    |||||||||| |||||||||| ||||||||||||    
T  26661845 ccaaaatatgctaataaccataacgctgaattct 26661878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 102 - 232
Target Start/End: Original strand, 6049912 - 6050043
Alignment:
Q  102 aaacccatgatctttgtg-tgtgcatcaactgcttgtcaattaggtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttcc 200  Q
    |||||||| ||||||||| ||| |||||||||||||  | || |||| | ||||||||||||||  ||||||||||||| |||||| |   |||||||||    
T  6049912 aaacccatcatctttgtggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttcc 6050011  T
Q  201 attactcaacatagatttggtgattgatatca 232  Q
    ||||||||||||||||||||||||||||||||    
T  6050012 attactcaacatagatttggtgattgatatca 6050043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 21481331 - 21481564
Alignment:
Q  7 tccaagaatatacctcttctacccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaacc 106  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481331 tccaacaaaatacctcttctacccttgccattcctgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaacc 21481430  T
Q  107 catgatctttgtgtgtgcatcaactgcttgtcaattaggtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattact 206  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  21481431 catgatctttgtgtgtgcatcaactacttgccaattgggtttttgatttcactcttctattcaaggtaacatctaatttcatcataattcttccattact 21481530  T
Q  207 caacatagatttggtgattgatatcaattctctg 240  Q
    ||||||||||||||||||||||||||||||||||    
T  21481531 caacatagatttggtgattgatatcaattctctg 21481564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 340 - 472
Target Start/End: Original strand, 21481663 - 21481797
Alignment:
Q  340 ccactgtttggcaattcttgtttttt-cccaatcatgaatcaatgcnnnnnnnggtt-agagacaacttgtttttattaacccaccttcttctaactttt 437  Q
    |||||||||||||||||||||||||| |||||||||||||||||||        ||| ||||||||||||||||||||||||||||||||||||||||||    
T  21481663 ccactgtttggcaattcttgtttttttcccaatcatgaatcaatgcaaaaaaaagtttagagacaacttgtttttattaacccaccttcttctaactttt 21481762  T
Q  438 cccaaaatatgttaataaccatgacgctgaattct 472  Q
    ||||||||||| |||||||||||||||||||||||    
T  21481763 cccaaaatatgctaataaccatgacgctgaattct 21481797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 19701161 - 19701298
Alignment:
Q  104 acccatgatctttgt-gtgtgcatcaactgcttgtcaattaggtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccat 202  Q
    ||||||||||||||| |||| |||||||||||||  | ||  ||||| ||||||||| ||||  ||||||||||||||||||||||  ||||||||||||    
T  19701161 acccatgatctttgtagtgttcatcaactgcttgctatttgagttttggatttcacttttctcttcaaggtaccatctaatttcattttaattcttccat 19701260  T
Q  203 tactcaacatagatttggtgattgatatcaattctctg 240  Q
    ||||||||||||||||| ||||| |||||| |||||||    
T  19701261 tactcaacatagatttgttgatttatatcatttctctg 19701298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 28 - 226
Target Start/End: Complemental strand, 13331727 - 13331531
Alignment:
Q  28 cccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatc 127  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| | |||| |||||||   |||||||||||||||||||| ||||    
T  13331727 cccttgccattcccgctattcttt--ctctgattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatc 13331630  T
Q  128 aactgcttgtcaattaggtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 226  Q
    |||||||||   |||  ||||||||||||||||||||  ||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13331629 aactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 13331531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 28 - 226
Target Start/End: Complemental strand, 13342642 - 13342446
Alignment:
Q  28 cccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatc 127  Q
    |||||| |||||||||||||||||  ||||||||||||||||||||||||||||||| | |||| |||||||   |||||||||||||||||||| ||||    
T  13342642 cccttgtcattcccgctattcttt--ctctgattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatc 13342545  T
Q  128 aactgcttgtcaattaggtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 226  Q
    |||||||||   |||  ||||||||||||||||||||  ||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13342544 aactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 13342446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 28 - 226
Target Start/End: Complemental strand, 5672198 - 5672002
Alignment:
Q  28 cccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatc 127  Q
    |||||| |||||||||||||||||  ||||||||||||||||||||||||||||||| | |||| |||||||   |||||||||||||||||||| ||||    
T  5672198 cccttgtcattcccgctattcttt--ctctgattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatc 5672101  T
Q  128 aactgcttgtcaattaggtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 226  Q
    |||||||||   |||  ||||||||||||||||||||  ||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  5672100 aactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 5672002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 28 - 240
Target Start/End: Complemental strand, 32718020 - 32717808
Alignment:
Q  28 cccttgccattcccgctattctttttctctg--attcccgctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgt-gtgtgc 124  Q
    ||||||||||||||||||   ||||||||||  |||||||||||   |||||||||||||| |||| || |||||||||||||| |||||||| |||| |    
T  32718020 cccttgccattcccgctaaa-tttttctctgctattcccgctaatt-ttttcacccatgatcttctata-aaaaagaaacccattatctttgtagtgttc 32717924  T
Q  125 atcaactgcttgtcaattaggtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgat 224  Q
    ||||||||||||    ||  ||||| ||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  32717923 atcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagatttggtgat 32717824  T
Q  225 tgatatcaattctctg 240  Q
    | |||||| |||||||    
T  32717823 ttatatcatttctctg 32717808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 28 - 240
Target Start/End: Original strand, 10637574 - 10637786
Alignment:
Q  28 cccttgccattcccgctattctttttctctg--attcccgctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgt-gtgtgc 124  Q
    ||||||||||||||||||   ||||||||||  |||||||||||   |||||||||||||| |||| || |||||||||||||| |||||||| |||| |    
T  10637574 cccttgccattcccgctaaa-tttttctctgctattcccgctaatt-ttttcacccatgatcttctata-aaaaagaaacccattatctttgtagtgttc 10637670  T
Q  125 atcaactgcttgtcaattaggtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgat 224  Q
    ||||||||||||    ||  ||||| ||||||||||||||  |||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  10637671 atcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtatcatctaatttcattttaattcttccattactcaacatagatttggtgat 10637770  T
Q  225 tgatatcaattctctg 240  Q
    | |||||| |||||||    
T  10637771 ttatatcatttctctg 10637786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 28 - 240
Target Start/End: Original strand, 22893729 - 22893941
Alignment:
Q  28 cccttgccattcccgctattctttttctctg--attcccgctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgt-gtgtgc 124  Q
    ||||||||||||||||||   ||||||||||  |||||||||||   |||||||||||||| |||| || |||| |||||||||||||||||| |||| |    
T  22893729 cccttgccattcccgctaaa-tttttctctgctattcccgctaatt-ttttcacccatgatcttctata-aaaaggaaacccatgatctttgtagtgttc 22893825  T
Q  125 atcaactgcttgtcaattaggtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgat 224  Q
    ||||||||||||    ||  ||||| ||||||||||||||  |||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  22893826 atcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtaacatctaatttcattttaattcttccattactcaacatagatttggtgat 22893925  T
Q  225 tgatatcaattctctg 240  Q
    | |||||| |||||||    
T  22893926 ttatatcatttctctg 22893941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 232
Target Start/End: Original strand, 44306129 - 44306259
Alignment:
Q  102 aaacccatgatctttgtg-tgtgcatcaactgcttgtcaattaggtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttcc 200  Q
    |||||||| ||||||||| ||| |||||||||||||  | || |||| | ||||||||||||||  ||||||||||||| |||| | |   |||||||||    
T  44306129 aaacccatcatctttgtggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatt-cttttcaattcttcc 44306227  T
Q  201 attactcaacatagatttggtgattgatatca 232  Q
    ||||||||||||||||||||| ||||||||||    
T  44306228 attactcaacatagatttggtcattgatatca 44306259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 45 - 226
Target Start/End: Complemental strand, 15762154 - 15761973
Alignment:
Q  45 attctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatcaactgcttgtcaattag 144  Q
    |||||||||||||||||||| |||||||||||||| |||| | |||| ||||||||  | |  ||||||||||| ||| ||||||||  |||  |||| |    
T  15762154 attctttttctctgattcccactaaacattttcactcatgttcttctatataaaaaacatcatatgatctttgtatgttcatcaactatttgctaatttg 15762055  T
Q  145 gtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 226  Q
    | ||||||||||||| ||||  |||| ||||||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  15762054 ggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttctattactcaacatagatttggtgattg 15761973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 9594 - 9731
Alignment:
Q  104 acccatgatctttgt-gtgtgcatcaactgcttgtcaattaggtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccat 202  Q
    ||||||||||||||| |||| ||||||||||||||   ||  ||||| ||||||||||||||  ||||||||||||||||||||||  ||||||||||||    
T  9594 acccatgatctttgtagtgttcatcaactgcttgttgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccat 9693  T
Q  203 tactcaacatagatttggtgattgatatcaattctctg 240  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  9694 tactcaacatagatttggtgatttatatcatttctctg 9731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 13893810 - 13893697
Alignment:
Q  119 gtgtgcatcaactgcttgtcaattaggtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagattt 218  Q
    |||| |||||||||||||| | || |||| | ||||||||||||||  ||||||||||||| |||||| |   |||||||||||||||||||||||||||    
T  13893810 gtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagattt 13893711  T
Q  219 ggtgattgatatca 232  Q
    ||||||||||||||    
T  13893710 ggtgattgatatca 13893697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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