View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13029_low_6 (Length: 461)
Name: NF13029_low_6
Description: NF13029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13029_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 8 - 441
Target Start/End: Complemental strand, 41324534 - 41324101
Alignment:
| Q |
8 |
agataatacttaggacattgaagcttctcttttggggtatactattgcaaggtaaacaaaactcctcaaactcactatatatacannnnnnnaagcatcc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41324534 |
agataatacttaggacattgaagcttctcttttggggtatactattgcaaggtaaacaaaactcctcaaactcactatatatacatttttttaagcatcc |
41324435 |
T |
|
| Q |
108 |
ttctagatatactaagtagaaatcacttccaaatttcaagcnnnnnnngagttgcataaataacaagattaatactacctaaattcattgataaatttaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41324434 |
ttctagatatactaagtagaaatcacttccaaatttcaagcaaaaaaagagttgcataaataacaagattaatactacctaaattcattgataaatttaa |
41324335 |
T |
|
| Q |
208 |
ttatgtaacataatacaggtggatactctcatgcactagaggataagctctcatatggagtcgacatgaaatttattagatggtgtggcattctacaggt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41324334 |
ttatgtaacataatacaggtggatactctcatgcactagaggataagctctcatatggagtcgacatgaaatttattagatggtgtggcattctacaggt |
41324235 |
T |
|
| Q |
308 |
aaaaaatcaaacgaattgaaaaatgttacgcgaggcctaatgcaaaataatcacatttgaacgcagttttgattgaccacatttttgaatttgtgtgtgc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41324234 |
aaaaaatcaaacgaattgaaaaatgttacgcgaggcctaatgcaaaataatcacatttgaacgcagttttgattgaccacatttttgaatttgtgtgtgc |
41324135 |
T |
|
| Q |
408 |
agagaatagcactagtatattgtattgtggctct |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41324134 |
agagaatagcactagtatattgtattgtggctct |
41324101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 41309836 - 41309754
Alignment:
| Q |
8 |
agataatacttaggacattgaagcttctcttttggggtatactattgcaaggtaaacaaaactcctcaaactcactatatata |
90 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
41309836 |
agataattctcaggacattgaaacttctcttttggggtatacttttgcaaggtaaacaaaactcttcaaactcactaaatata |
41309754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 41309534 - 41309494
Alignment:
| Q |
401 |
tgtgtgcagagaatagcactagtatattgtattgtggctct |
441 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
41309534 |
tgtgtgcagagaatagcccttgtatattgtattgtggctct |
41309494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 41309659 - 41309612
Alignment:
| Q |
260 |
atatggagtcgacatgaaatttattagatggtgtggcattctacaggt |
307 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
41309659 |
atatggagttaacatgaaatttatcagatggtgtggcattctccaggt |
41309612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 27657326 - 27657379
Alignment:
| Q |
255 |
ctctcatatggagtcgacatgaaatttattagatggtgtggcattctacaggta |
308 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
27657326 |
ctctcatatggagttgacatgaaatttatcagatggtgtggcattcttcaggta |
27657379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 27656723 - 27656779
Alignment:
| Q |
8 |
agataatacttaggacattgaagcttctcttttggggtatactattgcaaggtaaac |
64 |
Q |
| |
|
||||||| |||||||||| ||||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
27656723 |
agataatttttaggacattaaagcttctcttctggggtttacttttgcaaggtaaac |
27656779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University