View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302_high_11 (Length: 432)
Name: NF1302_high_11
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 216 - 421
Target Start/End: Complemental strand, 11264212 - 11264007
Alignment:
| Q |
216 |
gccaataattttcaaagatttaagtcatttgagatgaaaatgactaacatagtaaaatgaacgattaatttgtattttcatgagagcgcattaccaaaat |
315 |
Q |
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| T |
11264212 |
gccaataattttcaaagatttaagtcatttgagatgaaaatgactaacatagtataatgaacgattaatttgtattttcatgagagcgcattaccaaaat |
11264113 |
T |
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| Q |
316 |
attggttttcccataagttacagtacagtcgcgttacttgaattgaaattacagagaaaaatttcagttcatgtttcaacaaatctctagcaacagatat |
415 |
Q |
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| T |
11264112 |
attggttttcccataagttacagtacagttgcgttacttgaattgaaattacagagaaaaatttcagttcatgtttcaacaaatctctagcaacagatat |
11264013 |
T |
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| Q |
416 |
tttcat |
421 |
Q |
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|||||| |
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| T |
11264012 |
tttcat |
11264007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 30 - 219
Target Start/End: Complemental strand, 11264416 - 11264234
Alignment:
| Q |
30 |
tccttaacaaatacccttaatttttattataattttctttctaaaactcaatattgacctaatgaccgactaatcggagaaacaaatccgaccatccacc |
129 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11264416 |
tccttaacaaatgcccttaatttttattataattttctctctaaaactcaatatcgacctaatgaccgactaatcggagaaacaaatccgaccatccact |
11264317 |
T |
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| Q |
130 |
ggcagaggtacatttaaagaaggactagcccacataaaaatcatctttcttttattttattttatttcttgaagacatatcgacatgcca |
219 |
Q |
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| T |
11264316 |
ggcagaggtacatttaaagaaggactagcccacataaaa--catctttc-----ttttattttatttcttgaagacatatcgacatgcca |
11264234 |
T |
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