View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302_high_16 (Length: 344)
Name: NF1302_high_16
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 54 - 336
Target Start/End: Original strand, 49207588 - 49207870
Alignment:
| Q |
54 |
caaaactgtcatgatactactatcatatgaacataccgaatgatttaattttataatgatacagaaatttagcaaatgatatatgttcatttgaaaggta |
153 |
Q |
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| T |
49207588 |
caaaactgtcatgatactactattatatgaacataccgaatgatttaattttataatgatacagaaatttagcaaatgatatatgttcatttgaaaggta |
49207687 |
T |
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| Q |
154 |
ttaactatggatttgcggcctcaattagcattttgctacttctctttgtgtaatgtttaatctgtcgattgggggtctctagcttttgagaaacaaacat |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49207688 |
ttaactatggatttgcggcctcaattagcattttgctacttctctttgtgtaatgtttaatctgtcgattgggggtctctagcttttgagaaacaaacat |
49207787 |
T |
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| Q |
254 |
tcaaaacctatctgcaaccacaatatagtttattaaaaggcaactatatagcaccattgaatttttaactcccatcctatgat |
336 |
Q |
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| T |
49207788 |
tcaaaacctatctgcaaccacaatatagtttattaaaaggcaactatatagcaccattgaatttttaactcccatcctatgat |
49207870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 259
Target Start/End: Original strand, 49212373 - 49212475
Alignment:
| Q |
156 |
aactatggatttgcggcctcaattagcattttgctacttctctttgtgtaatgtttaatctgtcgattgggggtctctagcttttgagaaacaaacattc |
255 |
Q |
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|||||||||||| || || |||||||||||||| ||||||||||||| ||||||||||| |||| |||||||| |||| |||||||||||||||||| || |
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| T |
49212373 |
aactatggatttccgtccccaattagcattttgatacttctctttgtataatgtttaat-tgtcaattgggggcctctggcttttgagaaacaaacaatc |
49212471 |
T |
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| Q |
256 |
aaaa |
259 |
Q |
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|||| |
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|
| T |
49212472 |
aaaa |
49212475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 44396250 - 44396198
Alignment:
| Q |
6 |
acaatcaatgtcttcaataacaataattgacttacttgtagtctcaatcaaaa |
58 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44396250 |
acaatcaatgtcttcaataacaataattgacttacttgtagtctcaatcaaaa |
44396198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 32592891 - 32592835
Alignment:
| Q |
78 |
atatgaacataccgaatgatttaattttataatgatacagaaatttagcaaatgata |
134 |
Q |
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|||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
32592891 |
atatgaacataccgtatgatttagttttataatgatacataaatttagcaaatgata |
32592835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 6971337 - 6971285
Alignment:
| Q |
6 |
acaatcaatgtcttcaataacaataattgacttacttgtagtctcaatcaaaa |
58 |
Q |
| |
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||||||||| |||||||| ||||| || |||||||||| ||||||||||||| |
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| T |
6971337 |
acaatcaatatcttcaatcacaattatagacttacttgatgtctcaatcaaaa |
6971285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 2842439 - 2842387
Alignment:
| Q |
6 |
acaatcaatgtcttcaataacaataattgacttacttgtagtctcaatcaaaa |
58 |
Q |
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||||||||| ||||||||||||||||| || ||||| | ||||||||||||| |
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| T |
2842439 |
acaatcaatatcttcaataacaataatcgatttactcgacgtctcaatcaaaa |
2842387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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