View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302_high_17 (Length: 335)
Name: NF1302_high_17
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 39 - 239
Target Start/End: Complemental strand, 5662575 - 5662375
Alignment:
| Q |
39 |
tttcctaccctaataatttccatttatagatgtatagtgtcatgaatcacatgatgtcgtatatttcctaccaaagcaattcttttcatataccaattgc |
138 |
Q |
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| T |
5662575 |
tttcctaccctaatagtttccatttatagatgtatagtgtcatgaatcacatgatgtcgtatatttcctaccaaagcaattcttttcatataccaattgc |
5662476 |
T |
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| Q |
139 |
aaatgtttagtataatttcactagagttaggaccaaagtggaacataatacttcctcttttaccacagtaacggtcacattcagggacaaatccaaagta |
238 |
Q |
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| T |
5662475 |
aaatgtttagtataatttcactagagttaggaccaaagtggaacataatacttcctcttttaccacagtaacggtcacattcagggacaaatccaaagta |
5662376 |
T |
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| Q |
239 |
t |
239 |
Q |
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| T |
5662375 |
t |
5662375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 5662383 - 5662322
Alignment:
| Q |
259 |
ccaaagtatgataacatgatatcaacaaataccgacgttgatgcatattctatgaaccatgt |
320 |
Q |
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| T |
5662383 |
ccaaagtatgataacatgatatcaacaaataccgacgttgatgcatattctatgaaccatgt |
5662322 |
T |
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