View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302_high_20 (Length: 321)
Name: NF1302_high_20
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 39 - 308
Target Start/End: Complemental strand, 43360201 - 43359936
Alignment:
| Q |
39 |
cttccaacttataatatagtacagtcggtgcctttattattacttactattaacatcaattcaagaattaattgagagaaccttttttattgcacttgaa |
138 |
Q |
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| T |
43360201 |
cttccaacttataatatagtacagtcggtgcctttattattacttactattaacatcaattcaagaattaattgagagaaccttttttattgcacttgaa |
43360102 |
T |
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| Q |
139 |
cagttccaagccaaaaccctatttttcttccaaggaacaaattaaagacactattctcctatattgtgcaaaagtggaatccattatttatgatatttac |
238 |
Q |
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| T |
43360101 |
cagttccaagccaaaaccctatttttcttccaaggaacaaattaaagacactattctcctatattgtgcaaaagtggaatccattatttatgatatttac |
43360002 |
T |
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| Q |
239 |
-aaatagatacatttttagtaggagaagagaaggagagtactatagcggcgcatgagtcaatcaatcattc |
308 |
Q |
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| T |
43360001 |
aaaatagatacatttttagtag-----gagaaggagagtactatagcggcgcatgagtcaatcaatcattc |
43359936 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 26269037 - 26268999
Alignment:
| Q |
7 |
taaccaaaaccagccacaatactaatcggttgcttccaa |
45 |
Q |
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| T |
26269037 |
taaccaaaaccagccacaatactaatcggttgcttccaa |
26268999 |
T |
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