View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302_high_27 (Length: 267)
Name: NF1302_high_27
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 6998253 - 6998085
Alignment:
| Q |
1 |
atttattatttgaaagactaaaagttacaatattatgtatagtcaacaatttcttttaggtctactaaaaaatatatttttaggttaggtacattttgga |
100 |
Q |
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| T |
6998253 |
atttattatttgaaagactaaaagttacaatattatgtatagtcaacaatttcttttaggtctactaaaaaatatatttttaggttaggtacattttgga |
6998154 |
T |
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| Q |
101 |
cttgtgtgttcacaagattggatgtatagtgtttatacgtaatacacatataaagatatgcatttttaa |
169 |
Q |
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| T |
6998153 |
tttgtgtgttcacaagattggatgtatagtgtttatacgcaatacacatataaagatatgcatttttaa |
6998085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 6995138 - 6995088
Alignment:
| Q |
186 |
ccacccaagaatcgaatcatattgcataactcaaaaatttatctctgcagg |
236 |
Q |
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| T |
6995138 |
ccacccaagaatcgaatcatattgcataactcaaaaatttatctctgcagg |
6995088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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