View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302_high_32 (Length: 252)
Name: NF1302_high_32
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 6998344 - 6998582
Alignment:
| Q |
1 |
aattcataggtatcttggagttggagtttgattggtagtgatactatgcaaaatttatttaacatttaaatctattttagaataaattaatctcaaaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6998344 |
aattcataggtatcttggagttggagtttgattggtagtgatactaagcaaagtttatttaacatttaaatctattttagaataaattaatctcaaaatt |
6998443 |
T |
|
| Q |
101 |
tgacatgtcattgattaataacatgaaagttacatacccgaacaaactacatgaatatatcattgagttcaccttaaaatattgatatggcaacatcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6998444 |
tgacatgtcattgattaataacatgaaagttacatacccgaacaaactacgtga--atatcattgagttcaccttaaaatattgatatggcaacatcctt |
6998541 |
T |
|
| Q |
201 |
ctcacaatccaacgtgtactgatagcaactccctccccttt |
241 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||| |
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| T |
6998542 |
ctcacaatccaacgtggactgatagcaactccctccccttt |
6998582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 4626785 - 4626723
Alignment:
| Q |
51 |
aaatttatttaacatttaaatctattttagaataaattaatctcaaaatttgacatgtcattg |
113 |
Q |
| |
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|||||| ||||||||||||| ||||||| ||||||||||| | ||||| ||||||||||||| |
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| T |
4626785 |
aaatttgtttaacatttaaacttattttaaaataaattaatgtaaaaatatgacatgtcattg |
4626723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 37492722 - 37492660
Alignment:
| Q |
50 |
aaaatttatttaacatttaaatctattttagaataaattaatctcaaaatttgacatgtcatt |
112 |
Q |
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||||||| |||||||||||||| ||||||| ||||||||||| | ||||| ||||||| |||| |
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| T |
37492722 |
aaaatttgtttaacatttaaatttattttaaaataaattaatgtaaaaatatgacatgacatt |
37492660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 4692949 - 4693016
Alignment:
| Q |
52 |
aatttatttaacatttaaatctattttagaataaattaatctcaaaatttgacatgtcattgattaat |
119 |
Q |
| |
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||||| |||||||||||||| ||||||| |||||||||| | |||| |||||||||||||| |||| |
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| T |
4692949 |
aatttgtttaacatttaaatttattttaaaataaattaagatgcaaatatgacatgtcattgaataat |
4693016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 39489669 - 39489736
Alignment:
| Q |
48 |
gcaaaatttatttaacatttaaatctattttagaataaattaatctcaaaatttgacatgtcattgatt |
116 |
Q |
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||||||||||||||| |||| ||| ||||||| ||||||||||| | ||||| ||||||| ||||||| |
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| T |
39489669 |
gcaaaatttatttaatatttgaatttattttaaaataaattaatat-aaaatatgacatgatattgatt |
39489736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 35120156 - 35120197
Alignment:
| Q |
50 |
aaaatttatttaacatttaaatctattttagaataaattaat |
91 |
Q |
| |
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|||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
35120156 |
aaaatttatttaacatttaaatttattttaaaataaattaat |
35120197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 34430514 - 34430449
Alignment:
| Q |
49 |
caaaatttatttaacatttaaatctattttagaataaattaatctcaaaatttgacatgtcattga |
114 |
Q |
| |
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|||||||| |||||||||||||| ||||||| |||||||||| | ||||| ||||||| |||||| |
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| T |
34430514 |
caaaatttgtttaacatttaaatttattttaatataaattaatataaaaatatgacatgacattga |
34430449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 11443847 - 11443890
Alignment:
| Q |
48 |
gcaaaatttatttaacatttaaatctattttagaataaattaat |
91 |
Q |
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||||||||| |||||||||||||| ||||||| ||||||||||| |
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| T |
11443847 |
gcaaaatttgtttaacatttaaatttattttaaaataaattaat |
11443890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 513981 - 513924
Alignment:
| Q |
49 |
caaaatttatttaacatttaaatctattttagaataaattaatctcaaaatttgacat |
106 |
Q |
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|||||||| | |||||||||||| ||||||| ||||||||||| | ||||| |||||| |
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| T |
513981 |
caaaatttgtgtaacatttaaatttattttaaaataaattaatataaaaatatgacat |
513924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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