View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302_high_33 (Length: 241)
Name: NF1302_high_33
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 38 - 165
Target Start/End: Complemental strand, 1067829 - 1067702
Alignment:
| Q |
38 |
agaggttagagagagagaaagagtttcatggtgctgtttgtaacagatcataacagaacaataagtacctcgttcgtgtggtattgctttttatatgttt |
137 |
Q |
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| T |
1067829 |
agaggttagagaaagagaaagagtttcacggtgctgtttgtaacagaacagaacagaacaatgagtacctcgtgcgtgtggttttgctttttatatgttt |
1067730 |
T |
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| Q |
138 |
atagcagtgagtgtttttcttgtgagta |
165 |
Q |
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| T |
1067729 |
atagtagtgagtgtttttcttgtgagta |
1067702 |
T |
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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 26269026 - 26268964
Alignment:
| Q |
172 |
agccacaatactaatcggttgcttccaatccaagaaaacgatgcattactactacctttgctt |
234 |
Q |
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| T |
26269026 |
agccacaatactaatcggttgcttccaatccaagaaaacgatgcattactactacctttgctt |
26268964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 3112072 - 3112131
Alignment:
| Q |
175 |
cacaatactaatcggttgcttccaatccaagaaaacgatgcattactactacctttgctt |
234 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3112072 |
cacaaaactaaccggttgcttccaatccaagaaaacgatgcattactactacctttgctt |
3112131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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