View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1302_high_35 (Length: 232)
Name: NF1302_high_35
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_high_35 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 39838697 - 39838804
Alignment:
| Q |
1 |
ctcctctatttaagcccttcaactcctcctctttattcattcaatccattactcacattctcaattccataaaccaaacttcatcaaattctctctcaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39838697 |
ctcctctatttaagcccttcaactcctcctctttattcattcaatccattactcacattatcaattctataaaccaaacttcatcaaattctctctcaat |
39838796 |
T |
|
| Q |
101 |
cacaaaaa |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
39838797 |
cacaaaaa |
39838804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 31289677 - 31289764
Alignment:
| Q |
1 |
ctcctctatttaagcccttcaactcctcctctttattcattcaatccattactcacattctcaattccataaaccaaacttcatcaaa |
88 |
Q |
| |
|
||||| ||||||| ||||||||||||| || ||||||||| |||||| |||||||||||||||| |||||| |||| ||||||||| |
|
|
| T |
31289677 |
ctcctttatttaaacccttcaactccttcttcttattcattgaatccaacactcacattctcaattacataaatcaaagttcatcaaa |
31289764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 31291100 - 31291016
Alignment:
| Q |
1 |
ctcctctatttaagcccttcaactcctcctctttattcattcaatccattactcacattctcaattccataaaccaaacttcatcaaa |
88 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||||||||||||||| ||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
31291100 |
ctcctctatttaagcctatcgactcctcct---tattcattcaatccaacactcatattctcaatttcataaaccaaagttcatcaaa |
31291016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University