View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302_high_4 (Length: 618)
Name: NF1302_high_4
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 290 - 590
Target Start/End: Complemental strand, 45539602 - 45539302
Alignment:
| Q |
290 |
ccaattatttatctaatcataacacataattatttaaagattaagtctctcaaacaattcaataacaaaattcatccatgcatacaatgaaattataaaa |
389 |
Q |
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| T |
45539602 |
ccaattatttatctaatcataacacataattatttaaagattaagtctctcaaacaattcaataacaaaattcatccatgcatacaatgaaattataaaa |
45539503 |
T |
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| Q |
390 |
caccatacaagcctgccaaacaatttatttaaaaacatgtggagaaaataacaatgttacatacaaaatcaatgcatctgaaaaattgaacgagactgct |
489 |
Q |
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| T |
45539502 |
caccatacaagcctgccaaacaatttatttaaaaacatgtggagaaaataacaatgttacatacaaaatcaatgcatctgaaaaattgaacgagactgct |
45539403 |
T |
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| Q |
490 |
gaccaggccgctgctaaaatcaatcatgccatatatgaccaagaaatcagcagtcccatttctcataagaactaacaaatagaaatgttgtcgaagatat |
589 |
Q |
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| T |
45539402 |
gaccaggccgctgctaaaatcaatcatgccatatacgaccaagaaatcagcagtcccatttctcataagaactaacaaatagaaatgttgtcgaagatat |
45539303 |
T |
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| Q |
590 |
t |
590 |
Q |
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| T |
45539302 |
t |
45539302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 45539865 - 45539665
Alignment:
| Q |
27 |
atactaaacttgcatacaaacacactcaaatatatatgtcaataactataaacaaattcacacaagcttccaattttttcatgccctttataacattgtt |
126 |
Q |
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| T |
45539865 |
atactaaacttgcatacaaacacactcaaatatatatgtcaataactataaacaaattcacacaagcttccaattctttcatgccctttataacattgtt |
45539766 |
T |
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| Q |
127 |
gatatcatatacaatcgtaatagaaaagacacaaactgcagtatttatatcttcaatatgtgcatctccgctaaatattacaacattaaatgtatgaaat |
226 |
Q |
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| T |
45539765 |
gatatcatatacaatcgtaatagaaaagacacaaactgcagtatttatatcttcaatatgtgcatctccgctaaatattacaacattaaatgtatgaaat |
45539666 |
T |
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| Q |
227 |
a |
227 |
Q |
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| T |
45539665 |
a |
45539665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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