View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1302_low_1 (Length: 768)

Name: NF1302_low_1
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1302_low_1
NF1302_low_1
[»] chr7 (4 HSPs)
chr7 (30-759)||(28071261-28071990)
chr7 (254-290)||(1668359-1668395)
chr7 (247-311)||(34925254-34925318)
chr7 (221-316)||(23117277-23117372)
[»] chr2 (6 HSPs)
chr2 (265-316)||(29378603-29378654)
chr2 (217-316)||(38434153-38434252)
chr2 (189-310)||(27309609-27309730)
chr2 (221-290)||(44460379-44460448)
chr2 (268-311)||(35849472-35849515)
chr2 (270-311)||(24098479-24098520)
[»] chr5 (1 HSPs)
chr5 (217-283)||(42440139-42440205)
[»] chr3 (2 HSPs)
chr3 (166-250)||(28802757-28802841)
chr3 (217-290)||(36303135-36303208)
[»] chr8 (1 HSPs)
chr8 (247-310)||(26466092-26466155)
[»] chr6 (1 HSPs)
chr6 (264-309)||(25192095-25192140)
[»] chr4 (1 HSPs)
chr4 (265-311)||(48244389-48244435)
[»] chr1 (1 HSPs)
chr1 (257-311)||(10363450-10363504)
[»] scaffold0137 (1 HSPs)
scaffold0137 (270-311)||(36033-36074)


Alignment Details
Target: chr7 (Bit Score: 710; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 30 - 759
Target Start/End: Original strand, 28071261 - 28071990
Alignment:
Q  30 ccttgcctgtattacaatgtgagcatgtaagttttctgttacttcttaaacaagtttgtgttctacttatccattcatgttaaactcacaggtctttatt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071261 ccttgcctgtattacaatgtgagcatgtaagttttctgttacttcttaaacaagtttgtgttctacttatccattcatgttaaactcacaggtctttatt 28071360  T
Q  130 tgtgctgccacatagtggctatagcagcacagttacatagcggaattttaacaaaccagtactattccgcgatatatgatataatataaagtgttgtcaa 229  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071361 tgtgctgccacatagtggctatagcagcacagttgcatagcggaattttaacaaaccagtactattccgcgatatatgatataatataaagtgttgtcaa 28071460  T
Q  230 atagcggttatggcagtgctataacattgtaacatagtggaatttgaacaaaccgctatttcccacaatctgcgattgacaatactgaaattatcttatg 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28071461 atagcggttatggcagtgctataacattgtaacatagtggaatttgaacaaaccgctatttcccacaatctgcgattgacaatactgaaattattttatg 28071560  T
Q  330 atattataactatagagtttagtaaaaagacaatagttattcttaaaattcttttacatgaagggtgtagtctaaatccaaccctatgatttgagggata 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071561 atattataactatagagtttagtaaaaagacaatagttattcttaaaattcttttacatgaagggtgtagtctaaatccaaccctatgatttgagggata 28071660  T
Q  430 ttcttgaaaagaccctcaaaattctaaacataattgcgactcttagattttaggtataacttagtcccataaaatcgaattgtaaagagaggattgcgaa 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071661 ttcttgaaaagaccctcaaaattctaaacataattgcgactcttagattttaggtataacttagtcccataaaatcgaattgtaaagagaggattgcgaa 28071760  T
Q  530 agctttatttaagttgcatcactagccaatacgggacttggactttttccaatacacctattcgtgtccaaggctattgggcatttattgtagaaattga 629  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071761 agctttatttaagttgcatcactagccaatactggacttggactttttccaatacacctattcgtgtccaaggctattgggcatttattgtagaaattga 28071860  T
Q  630 caccatattagattttaggcctaactcatccctacaaaattcgacttatgaagtgacaattgtttaagctttataaactcttttaaagccttatctctaa 729  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071861 caccacattaggttttaggcctaactcatccctacaaaattcgacttatgaagtgacaattgtttaagctttataaactcttttaaagccttatctctaa 28071960  T
Q  730 tcaatgttaccttcaatttttcagaataat 759  Q
    ||||||||||||||||||||||||||||||    
T  28071961 tcaatgttaccttcaatttttcagaataat 28071990  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 1668395 - 1668359
Alignment:
Q  254 cattgtaacatagtggaatttgaacaaaccgctattt 290  Q
    ||||||| |||||||||||||||||||||||||||||    
T  1668395 cattgtagcatagtggaatttgaacaaaccgctattt 1668359  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 34925318 - 34925254
Alignment:
Q  247 gctataacattgtaacatagtggaatttgaacaaaccgctatttcccacaatctgcgattgacaa 311  Q
    |||||| ||||||| |||||  |||||||||||||| ||||||| |||| |||||| ||||||||    
T  34925318 gctatagcattgtagcatagcagaatttgaacaaactgctattttccacgatctgcaattgacaa 34925254  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 316
Target Start/End: Complemental strand, 23117372 - 23117277
Alignment:
Q  221 tgttgtcaaatagcggttatggcagtgctataacattgtaacatagtggaatttgaacaaaccgctatttcccacaatctgcgattgacaatactg 316  Q
    |||||| |||||| || ||| |||| |||||| || ||| || ||| |||||||||||||||| |||||| || ||||| || |||||||| ||||    
T  23117372 tgttgtgaaatagtgggtatagcagcgctatagcactgtcacgtagcggaatttgaacaaaccactattttccgcaatccgcaattgacaacactg 23117277  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 29378603 - 29378654
Alignment:
Q  265 agtggaatttgaacaaaccgctatttcccacaatctgcgattgacaatactg 316  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  29378603 agtggaatttgaacaaaccgctatttcccacgatccgcgattgacaacactg 29378654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 217 - 316
Target Start/End: Original strand, 38434153 - 38434252
Alignment:
Q  217 aaagtgttgtcaaatagcggttatggcagtgctataacattgtaacatagtggaatttgaacaaaccgctatttcccacaatctgcgattgacaatactg 316  Q
    |||||||||| |||||||| |||| ||| ||||||| || ||||||||||  |||||||||||||| ||||||| ||    |||||||||||||| ||||    
T  38434153 aaagtgttgttaaatagcgattatagcattgctatagcactgtaacatagcagaatttgaacaaactgctattttccgtgttctgcgattgacaacactg 38434252  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 189 - 310
Target Start/End: Original strand, 27309609 - 27309730
Alignment:
Q  189 tactattccgcgatatatgatataatataaagtgttgtcaaatagcggttatggcagtgctataacattgtaacatagtggaatttgaacaaaccgctat 288  Q
    ||||||||  ||||| | ||| || ||||||||||||||||||||||| |||   ||||||||| || |||| |||||  |||| ||||||||||| |||    
T  27309609 tactattctacgatacacgatttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaaccgatat 27309708  T
Q  289 ttcccacaatctgcgattgaca 310  Q
    || |  ||||||| ||||||||    
T  27309709 tttcagcaatctgtgattgaca 27309730  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 44460379 - 44460448
Alignment:
Q  221 tgttgtcaaatagcggttatggcagtgctataacattgtaacatagtggaatttgaacaaaccgctattt 290  Q
    ||||||||||||||  |||| || |||||  ||||||||| ||||||| |||||||||||||||||||||    
T  44460379 tgttgtcaaatagcaattattgcggtgcttcaacattgtagcatagtgaaatttgaacaaaccgctattt 44460448  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 268 - 311
Target Start/End: Complemental strand, 35849515 - 35849472
Alignment:
Q  268 ggaatttgaacaaaccgctatttcccacaatctgcgattgacaa 311  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||    
T  35849515 ggaatttgaacaaaccgctattttccacaatctgcaattgacaa 35849472  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 24098479 - 24098520
Alignment:
Q  270 aatttgaacaaaccgctatttcccacaatctgcgattgacaa 311  Q
    |||||||||||||| |||||| |||||||||| |||||||||    
T  24098479 aatttgaacaaacccctattttccacaatctgtgattgacaa 24098520  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 42440139 - 42440205
Alignment:
Q  217 aaagtgttgtcaaatagcggttatggcagtgctataacattgtaacatagtggaatttgaacaaacc 283  Q
    ||||| ||||||||||| || ||| |||||||||||||| |||| ||||| ||||||||||||||||    
T  42440139 aaagttttgtcaaatagaggctatagcagtgctataacactgtagcatagcggaatttgaacaaacc 42440205  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 250
Target Start/End: Complemental strand, 28802841 - 28802757
Alignment:
Q  166 atagcggaattttaacaaaccagtactattccgcgatatatgatataatataaagtgttgtcaaatagcggttatggcagtgcta 250  Q
    |||||||||||||| ||||||| || | |||||||||||   || ||||||||||||||||||||||| || ||| |||| ||||    
T  28802841 atagcggaattttaccaaaccactattgttccgcgatatgctatttaatataaagtgttgtcaaatagtggctatagcagcgcta 28802757  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 36303135 - 36303208
Alignment:
Q  217 aaagtgttgtcaaatagcggttatggcagtgctataacattgtaacatagtggaatttgaacaaaccgctattt 290  Q
    |||||||||||||||||| |  ||||  |||||||| |  ||||  |||| |||||||||||||||||||||||    
T  36303135 aaagtgttgtcaaatagctggaatggtggtgctatagcgctgtactatagcggaatttgaacaaaccgctattt 36303208  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 26466092 - 26466155
Alignment:
Q  247 gctataacattgtaacatagtggaatttgaacaaaccgctatttcccacaatctgcgattgaca 310  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||| ||| |||||  ||||||||    
T  26466092 gctatatcattgtagcatagtggaatttgaacaaaccgttattttccaaaatctatgattgaca 26466155  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 25192095 - 25192140
Alignment:
Q  264 tagtggaatttgaacaaaccgctatttcccacaatctgcgattgac 309  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||    
T  25192095 tagtggaatttgaatagaccgctatttcccacaatctgtgattgac 25192140  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 48244435 - 48244389
Alignment:
Q  265 agtggaatttgaacaaaccgctatttcccacaatctgcgattgacaa 311  Q
    ||||||||||||||||||||||| || |||| |||||| ||||||||    
T  48244435 agtggaatttgaacaaaccgctaatttccactatctgcaattgacaa 48244389  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 10363450 - 10363504
Alignment:
Q  257 tgtaacatagtggaatttgaacaaaccgctatttcccacaatctgcgattgacaa 311  Q
    ||||| |||||||||||||||||||  ||||||| |||  |||||||||||||||    
T  10363450 tgtaatatagtggaatttgaacaaaatgctattttccatgatctgcgattgacaa 10363504  T

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Target: scaffold0137 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 36074 - 36033
Alignment:
Q  270 aatttgaacaaaccgctatttcccacaatctgcgattgacaa 311  Q
    |||| |||||||||||||||| ||||||||||| ||||||||    
T  36074 aattggaacaaaccgctattttccacaatctgcaattgacaa 36033  T

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