View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1302_low_13 (Length: 427)
Name: NF1302_low_13
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 6273072 - 6272769
Alignment:
| Q |
16 |
atagctacaagacaaccacaaagaaagtgttggtaccatacggcctgttaaagttgagtgaaagaacgacaagtatgggaaactttgcctatatatacag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6273072 |
atagctacaagacaaccacaaagaaagtgttggtaccatatggcctgttaaagttgagtgaaagaacgacaagtatgggaaactttgcctatatatacag |
6272973 |
T |
|
| Q |
116 |
ttaaatctcaacattattcacaacattaatctttcattcaaatatttcttataatcttcaattcatttagttgattaaattcatattcataagacaagat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
6272972 |
ttaaatctcaacattattcacaacattaatctttcattcaaatatttcttataatcttcaattcatttagttgattaaattcatattcacaagacaagat |
6272873 |
T |
|
| Q |
216 |
ggactctaacaatgcaagcttcaatgctggacaggctaagggccaaacccaggttttcgttctcttccctcgtagacttttctcgttttcaaatacgatg |
315 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
6272872 |
ggactctaacaatgcaagttttaatgctggacaggccaagggccaaacccaggtttccgttctcttccctcgtagacatttcttgttttcaaatacgatg |
6272773 |
T |
|
| Q |
316 |
aaag |
319 |
Q |
| |
|
|||| |
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|
| T |
6272772 |
aaag |
6272769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 93 - 282
Target Start/End: Complemental strand, 6239206 - 6239017
Alignment:
| Q |
93 |
ggaaactttgcctatatatacagttaaatctcaacattattcacaacattaatctttcattcaaatatttcttataatcttcaattcatttagttgatta |
192 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||| |
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| T |
6239206 |
ggaaacttttcatatatatacagttaaatctcaacattaatcacaacattaatctttcattcaattatttcttataatcttcaatatattcagttgatta |
6239107 |
T |
|
| Q |
193 |
aattcatattcataagacaagatggactctaacaatgcaagcttcaatgctggacaggctaagggccaaacccaggttttcgttctcttc |
282 |
Q |
| |
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| |||||||||| |||||||||||||||||||| | ||||||| ||||||||||||||| ||||| ||||||||||||| | |||||||| |
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| T |
6239106 |
atttcatattcacaagacaagatggactctaaccaggcaagctacaatgctggacaggccaagggtcaaacccaggtttcccttctcttc |
6239017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 100 - 281
Target Start/End: Complemental strand, 6226579 - 6226398
Alignment:
| Q |
100 |
ttgcctatatatacagttaaatctcaacattattcacaacattaatctttcattcaaatatttcttataatcttcaattcatttagttgattaaattcat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||| ||||| |
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| T |
6226579 |
ttgcctatatatacagttaaatctcaacattaatcacaacattaatctttcattcaattatttcttataatcttcaatttattcagttgattaatttcat |
6226480 |
T |
|
| Q |
200 |
attcataagacaagatggactctaacaatgcaagcttcaatgctggacaggctaagggccaaacccaggttttcgttctctt |
281 |
Q |
| |
|
||||| |||| ||||||||||| || | ||||||| ||||||||||||||| ||||||||||| ||||||| | ||||||| |
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|
| T |
6226479 |
attcacaagataagatggactccaatcaggcaagctacaatgctggacaggccaagggccaaactcaggtttcccttctctt |
6226398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 93 - 271
Target Start/End: Complemental strand, 6248044 - 6247866
Alignment:
| Q |
93 |
ggaaactttgcctatatatacagttaaatctcaacattattcacaacattaatct---ttcattcaaatatttcttataatcttcaattcatttagttga |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||| |
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| T |
6248044 |
ggaaactttgcctatatatacagttaaatctcaacactaatcacaacattaatctaatttcattcaaatatttcctataatcttcaattcattcagttga |
6247945 |
T |
|
| Q |
190 |
ttaaattcatattcataagacaagatggactctaacaatgcaagcttcaatgctggacaggctaagggccaaacccaggttt |
271 |
Q |
| |
|
|||| |||||||||| | |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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|
| T |
6247944 |
ttaatttcatattcaca---caagatggactctaacaatgcaagctataatgctggacaggccaagggccaaacccaggttt |
6247866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 90 - 282
Target Start/End: Complemental strand, 6280769 - 6280574
Alignment:
| Q |
90 |
atgggaaactttgcctatatatacagttaaatctcaacattattcacaacattaatctttcattcaaatatttcttataatcttcaattcatttagttga |
189 |
Q |
| |
|
|||| |||| |||| ||||||| |||||| ||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |
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|
| T |
6280769 |
atggtaaacattgcgtatatattgagttaattctcaacattaatcacaacattaatctttcattcaactatttctcataatcttcaattcattcagttga |
6280670 |
T |
|
| Q |
190 |
ttaaattcatattcataagacaagatggac---tctaacaatgcaagcttcaatgctggacaggctaagggccaaacccaggttttcgttctcttc |
282 |
Q |
| |
|
|||| |||||||||| |||| ||||||||| |||||||||||||||| ||||||||| ||| ||||||||||||||||||| | |||||||| |
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|
| T |
6280669 |
ttaatttcatattcacaagataagatggactcttctaacaatgcaagctacaatgctggtcagatcaagggccaaacccaggtttcccttctcttc |
6280574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 90 - 271
Target Start/End: Complemental strand, 6253224 - 6253046
Alignment:
| Q |
90 |
atgggaaactttgcctatatatacagttaaatctcaacattattcacaacattaatctttcattcaaatatttcttataatcttcaattcatttagttga |
189 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| ||| ||| |||||||||||| ||||||||||| ||||||||||||| ||||||| || |||||| |
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|
| T |
6253224 |
atgggaaattttgcctatatatacagttatatcttaacgttaatcacaacattaaactttcattcaattatttcttataattttcaatttatccagttga |
6253125 |
T |
|
| Q |
190 |
ttaaattcatattcataagacaagatggactctaacaatgcaagcttcaatgctggacaggctaagggccaaacccaggttt |
271 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||||| | |||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
6253124 |
ttaatttcatattc---acacaagatggactctaaccagacaagctacaatgctggacaggccaagggccaaacccaggttt |
6253046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 136 - 287
Target Start/End: Complemental strand, 6234254 - 6234103
Alignment:
| Q |
136 |
caacattaatctttcattcaaatatttcttataatcttcaattcatttagttgattaaattcatattcataagacaagatggactctaacaatgcaagct |
235 |
Q |
| |
|
||||||||||| | |||||| ||||||||||||||||||||| ||| |||||||||| |||||||| | |||| ||||||||||||||| | ||||||| |
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|
| T |
6234254 |
caacattaatcatcaattcaattatttcttataatcttcaatttattcagttgattaatttcatattaacaagataagatggactctaaccaggcaagct |
6234155 |
T |
|
| Q |
236 |
tcaatgctggacaggctaagggccaaacccaggttttcgttctcttccctcg |
287 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | |||||||| |||| |
|
|
| T |
6234154 |
acaatgctggacaggccaagggccaaacccaggtttcccttctcttctctcg |
6234103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 128 - 271
Target Start/End: Complemental strand, 6259579 - 6259442
Alignment:
| Q |
128 |
attattcacaacattaatctttcattcaaatatttcttataatcttcaattcatttagttgattaaattcatattcataagacaagatggactctaacaa |
227 |
Q |
| |
|
|||| ||||||||||| |||||| || ||||||||||||||| ||||| ||||||||||||||||| |||| |||| |||||||||||||| || |
|
|
| T |
6259579 |
attaatcacaacattagtctttcgttgaaatatttcttataaacttcagttcatttagttgattaa------tttcacaagataagatggactctaataa |
6259486 |
T |
|
| Q |
228 |
tgcaagcttcaatgctggacaggctaagggccaaacccaggttt |
271 |
Q |
| |
|
||||||| ||||||||||||||| | |||||||||||||||| |
|
|
| T |
6259485 |
cgcaagctacaatgctggacaggcccaaggccaaacccaggttt |
6259442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 160 - 262
Target Start/End: Complemental strand, 6264087 - 6263982
Alignment:
| Q |
160 |
tttcttataatcttcaattc-atttagttgattaaattcatattcataagacaagat--ggactctaacaatgcaagcttcaatgctggacaggctaagg |
256 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||| |||| || || |||||||||| |||| |||||| ||||||||||| | |||| |
|
|
| T |
6264087 |
tttcttataatcttcaattccatttagttgattaatttcatattcacaagataaaatatggactctaacgatgcgagcttccatgctggacagaccaagg |
6263988 |
T |
|
| Q |
257 |
gccaaa |
262 |
Q |
| |
|
|||||| |
|
|
| T |
6263987 |
gccaaa |
6263982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 6234288 - 6234247
Alignment:
| Q |
90 |
atgggaaactttgcctatatatacagttaaatctcaacatta |
131 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6234288 |
atggtaaactttgcctatatatacagttatatctcaacatta |
6234247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 6272705 - 6272667
Alignment:
| Q |
383 |
aaaatgtatctcttatttgatataagttttgtaccttcc |
421 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
6272705 |
aaaatatatctcttattcgatataagttttgtaccttcc |
6272667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 93 - 271
Target Start/End: Complemental strand, 24469912 - 24469730
Alignment:
| Q |
93 |
ggaaactttgcctatatatacagttaaatctcaacattat----tcacaacattaatctttcattcaaatatttcttataatcttcaattcatttagttg |
188 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
24469912 |
ggaaacttgacctatatattcagttaaatctcaacattaactaatcacaatattagtctttcattcaaatatttcttataatcttcaattcattcagttg |
24469813 |
T |
|
| Q |
189 |
attaaattcatattcataagacaagatggactctaacaatgcaagcttcaatgctggacaggctaagggccaaacccaggttt |
271 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||| |
|
|
| T |
24469812 |
attaatttcatattcacaagacaagatggactctaacaatgcaagctataatgcgggacaagcccagggccaaacccaggttt |
24469730 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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