View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302_low_15 (Length: 377)
Name: NF1302_low_15
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 279
Target Start/End: Complemental strand, 44071798 - 44071554
Alignment:
| Q |
30 |
cctaagaaggttggaaaagggaaaggggaaattggatctgcttctcaagagttttagggtttctgtgtgctgttttcagtagatcttagttttattgtga |
129 |
Q |
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| T |
44071798 |
cctaagaaagttggaaaagggaaaggggaaattggatctgcttctcaagagttttagggtttctgtgtgctgttttgagtagatcttagttttattgtga |
44071699 |
T |
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| Q |
130 |
tgatgcagttgtaacatttacatgtttgattaatttttaatcacttcaaaggggaaatgtttaccaatgtttgatttttaatttacagttaataattgct |
229 |
Q |
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| T |
44071698 |
tgatgcagttgtaacatttacatgtttgattaatttttaatcacttcaaaggggaaatgtttaccaatgtttgatttttaatttacagttaataattgct |
44071599 |
T |
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| Q |
230 |
gtttattgttaggtcttgtcttgtcttgaggttgaaaattgttaagcaag |
279 |
Q |
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| T |
44071598 |
gtttattgttag-----gttttgtcttgaggttgaaaattgttaagcaag |
44071554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 47033310 - 47033373
Alignment:
| Q |
30 |
cctaagaaggttggaaaagggaaaggggaaattggatctgcttctcaagagttttagggtttct |
93 |
Q |
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| T |
47033310 |
cctaagaaggttggaaagggcaaaggagaaattggatctgcttctcaagaattttagggtttct |
47033373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 47039594 - 47039667
Alignment:
| Q |
30 |
cctaagaaggttggaaaagggaaaggggaaattggatctgcttctcaagagttttagggtttctgtgtgctgtt |
103 |
Q |
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| T |
47039594 |
cctaagaaggttggaaagggaaaaggagaaattggatctgcgtctcaagaattctagggtttctgggttctgtt |
47039667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 47035307 - 47035242
Alignment:
| Q |
57 |
gaaattggatctgcttctcaagagttttagggtttctgtgtgctgttttcagtagatcttagtttt |
122 |
Q |
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| T |
47035307 |
gaaattggatctgcttctcaagaattttagggtttatgtgatctgttttgagtagctctcagtttt |
47035242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 325 - 367
Target Start/End: Original strand, 31938438 - 31938480
Alignment:
| Q |
325 |
ttagataaaaacatacacatagttgattaaacattatcctatg |
367 |
Q |
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| T |
31938438 |
ttagataaaaacatacacatagttgattaaacattatcctatg |
31938480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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