View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302_low_2 (Length: 742)
Name: NF1302_low_2
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 601; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 65 - 727
Target Start/End: Complemental strand, 26269037 - 26268372
Alignment:
| Q |
65 |
taaccaaaaccagccacaatactaatcggttgcttccaatccaagaaaacgatgcattactactacctttgctttctcttcttcgaaatgaaggtgaatg |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26269037 |
taaccaaaaccagccacaatactaatcggttgcttccaatccaagaaaacgatgcattactactacctttgctttctcttcttcgaaatgaaggtgaatg |
26268938 |
T |
|
| Q |
165 |
ttgttgtggaattgatcttgatgataaagattgaagttgaagttctcctcctctattgttgttgcattcctccatttgaatttttctttaactatgtgtc |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26268937 |
ttgttgtggaattgatcttgatgataaagattgaagttgaagttctcctcctctattgttgttgcattcctccatttgaatttttctttaactatgtgtc |
26268838 |
T |
|
| Q |
265 |
acattcataaattcttatttcctttttgagatagaattaatagaatgattgtaaagaaaagctatgctataattcttgatgctatctttttgcatttaca |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
26268837 |
acattcataaattcttatttcctttttgagatagaattaatagaatgattgtaaagaaaagctatgttctaattcttgatgctatctttttgcatttaca |
26268738 |
T |
|
| Q |
365 |
atggacccttttgcacgctatgtagcaactaacaatatgtgaatgttttctatgannnnnnngaatatgaatgaaagagagttttaacgaaaaaacaaga |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26268737 |
atggacccttttgcacgctatgtagcaactaacaatatgtgaatgttttctatgatttttttgaatatgaatgaaagagagttttaacgaaaaaacaaga |
26268638 |
T |
|
| Q |
465 |
gtggtatatagaagagaagggtgttattagtatgatagaaaacggttcacgagcggtgcacgtgttagtttggttggtcaactaaaatatttt----tta |
560 |
Q |
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| T |
26268637 |
gtggtatatagaagagaagggtgttattagtgtgat-gaaaacggttcacgagcggtgcacgtgttagtttggttggtcaactaaaatatttttatatta |
26268539 |
T |
|
| Q |
561 |
tattaggtgaggaaaagaaaggttaaaatatttcaagaattggagggaatcgcaacgactttggtatttgttgaaatgtaccatcatagatagatgccac |
660 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26268538 |
ttttaggtgaggaaaagaaaggttaaaatatttcaagaattggagggaatcgcaacgactttggtatttgttgaaatgtaccatcatagatagatgccac |
26268439 |
T |
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| Q |
661 |
gtaggtacaaaatatggcattgattgcttcttttcttagtgttctataattgagatcatcttgttat |
727 |
Q |
| |
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| T |
26268438 |
gtaggtacaaaatattgcattgattgcttcttttcttagtgttctataattgagatcatcttgttat |
26268372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 65 - 388
Target Start/End: Original strand, 3112058 - 3112366
Alignment:
| Q |
65 |
taaccaaaaccagccacaatactaatcggttgcttccaatccaagaaaacgatgcattactactacctttgctttctcttcttcgaaatgaaggtgaatg |
164 |
Q |
| |
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||||||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3112058 |
taaccaaaatcagacacaaaactaaccggttgcttccaatccaagaaaacgatgcattactactacctttgctttctcttcttctcaatgaaggtgaatg |
3112157 |
T |
|
| Q |
165 |
ttgttgtggaattgatcttgatgataaagattgaagttgaagttctcctcctctattgttgttgcattcctccatttgaatttttctttaactatgtgtc |
264 |
Q |
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||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||| || || |||||| ||| |
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| T |
3112158 |
ttgttgtggaattgatcttgatgatgaagattgaagtt---------ctcctctactgttgttgcattcctccatttga---ttact---actatgagtc |
3112242 |
T |
|
| Q |
265 |
acattcataaattcttatttcctttttgagatagaattaatagaatgattgtaaagaaaagctatgctataattcttgatgctatctttttgcatttaca |
364 |
Q |
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|||| ||||||||||| |||||||||||||| ||||| ||||||||||||||| | |||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
3112243 |
acatgcataaattcttttttcctttttgagacagaatcaatagaatgattgtatataaaagctatgttataattcttgatgctatgtttttgcatttaca |
3112342 |
T |
|
| Q |
365 |
atggacccttttgcacgctatgta |
388 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
3112343 |
atggacccttttgcacgctatgta |
3112366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 474 - 727
Target Start/End: Original strand, 3112409 - 3112659
Alignment:
| Q |
474 |
agaagagaagggtgttattagtatgatagaaaacggttcacgagcggtgcacgt----gttagtttggttggtcaactaaaatattttttata-----tt |
564 |
Q |
| |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| || |
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| T |
3112409 |
agaagagaagggttttatgagtatgatagaaaacggttcacgagcggtgcacgtgttagttagtttggttggtcaactaaaatattatttatattatttt |
3112508 |
T |
|
| Q |
565 |
aggtgaggaaaagaaaggttaaaatatttcaagaattggagggaatcgcaacgactttggtatttgttgaaatgtaccatcatagatagatgccacgtag |
664 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | | | |
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| T |
3112509 |
aggtgagcaaaagaaaggttaaaatatttcaagaatt----------gcaacgactttggtatttgttgaaatgtaccatcatag---gacattaatttg |
3112595 |
T |
|
| Q |
665 |
gtacaaaatatggcattgattgcttcttttctt-agtgttctataattgagatcatcttgttat |
727 |
Q |
| |
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|||||||| ||| |||||||| ||||| ||||| |||||||||||| |||||||| |||||||| |
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| T |
3112596 |
gtacaaaacatgacattgattacttctcttcttaagtgttctataactgagatcagcttgttat |
3112659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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