View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302_low_22 (Length: 327)
Name: NF1302_low_22
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 269440 - 269722
Alignment:
| Q |
16 |
ataatcaccttaatgttaagctgagagatggatatttgagagaaaattggaaccacataagcaagcaagatataggtactcctaaaggatgttacaccag |
115 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
269440 |
ataatcactttaatgttaagctgagagatggatatttgagagataattggaaccaaataagcaagcaagatataggtactcctaaaggatgttacaccag |
269539 |
T |
|
| Q |
116 |
atggttcacaaatcgttaaagatttgagaaatagaattaaaaatgctaaccaaatggaaactagatttctgatttaattcaattaaatgaagattttctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
269540 |
atggttcacaaatcgttaaagatttgagaaatagaattaaaaatgctaaccaaatggaaactagatttctgatttaattcaactaaatgaagattttctt |
269639 |
T |
|
| Q |
216 |
atgcatacataccatcacattattgaggtttcatattatcccattaagaatttgaactgcattgccatttattgtattcacac |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
269640 |
atgcatacataccatcacattattgaggtttcatattatcccattaagaatttgaactgcattgccatttattgtattcacac |
269722 |
T |
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